PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0030s0108.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 1490aa MW: 152752 Da PI: 8.5939

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0030s0108.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.3	6.4e-13	216	253	11	47
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyG.IkRWPhR 47 sk Fsl i++ A+e+gvc+Tv+Kr+CR +G I+ WP+R Vocar.0030s0108.1.p 216 SKGFSLDITETAREVGVCATVMKRACRSLGlINGWPFR 253 578*************************8899*9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.787	191	279	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-7	217	253	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1490 aa Download sequence Send to blast
MSLPPQASNH LTTHPHQPLH HLSPVEVIHH NAMSDKPMDS QGERPPVETP LPSSGALRTT 60 RYDRPQNNVI WLAGVAAAAA AATTNATATV EPPPPPPTTP AEPPSNSENF ARCGGGGQQQ 120 RGSNETLAAS GGGDAGGRGR KALAAATAAT AAPPAPSPSP PSATAAGLLL PSGARIITDA 180 AISIGAGRRF QRAVHVRRKD NREPFSITLD LLRSKSKGFS LDITETAREV GVCATVMKRA 240 CRSLGLINGW PFRVWKRCNY LRDAYLKDAI RMVSEAAALE QQFALSPQHA AKAAEMRSEA 300 ARLRARVEEV DKWWASVVAD PVGRELQGDP FFVNNVVRWT QSKYKEAHRL RAGAARGGGG 360 SSGSGGGGGG TTRSRKRGSG SNGIGGGDGA DAEAAGLGGD EEYGNASGDE DVEGKERRNW 420 GSGGAGDGGG GGGGSTDWEC EGMEGMDGDG VSDDEPGGGG MTTTTTATEA ARRRSSKATG 480 AAAAAAAAVG AETGPEIPDS MVRDAAADAA AVGLDGCYGA DACDDDQCTT APTCDPWVRT 540 LADMTSRPRL QPTWHLNPSG GDAGAHSSAT QRDGSGEAAA AAATQYGTQP PPYWQSSSPE 600 KPHTLALPRL PPPPPPPLHN TNVLMRLQRN DLQLQLQLLQ QQEQQEQQQQ QQVRRRAGER 660 DAKRRKLQVA DAADGGHIEL QPLPPPPRRL SSDSHLQLLQ LSASAPCMPR NQSDHLSRDL 720 VQAQNLNIVA QLDAVRHQIG TADSVLSATI AAAAAAVTNG NCGGGGSGFR RQRSRSITIL 780 GETLQDCRHH QTTEIVPVVQ AGGGSGSGSA AVAEPTAPSG PRTHAWALLG PTSGGDGDDG 840 VLAAAVRGHA GNAVPQFPEQ GSIPSLNELA DVAAASAADG TQPLPLRGSG SGGGNGGAGG 900 NGGGDHAAPS AMSAAAAAVQ RTIASLPHSP YHAMSSLPAV AFASPARTAW LPRVPGGGGG 960 GGGSSGADVL AVFSTAEGEP LRRRQPLNSS PSAPSSPPSP RDRTQPAAAP QALQQQVAPF 1020 RLSRESALSS LDAAAAAVAA VPSPPPSPLS PQHPRDQAHM STRLIRTVHA ASGYADRMRV 1080 HATGAGAAAA TVAAAAAAAG GCPGLSPRLP EPLILQLQHG AQQQQQQQRI GLAAATATAY 1140 LRKQQADSAA AAAAAAPPRT VPFTQQPQGH GAAAAAAASA SPFRPYVPLT PRSSVLLPLM 1200 PQPRLQPQRH QQQRQSSAIQ MTQRAPGVAG PQARSPPRHA LPSPPPPQQQ HASAAAAANA 1260 AGGGCNSSSP KTSPALGAGA SSPPKPAAVA APHAASAGGS AGGGGGALSS ILQELQPLLP 1320 AEVRRALSEL LQSSPRTTAT AAPSITTIVP SAQGRSPRQE QQRQQQQQQQ PQHQQQQPQQ 1380 QQQQQQQQQQ QQQEQHDHPD REQPLQPDHL QAVLMAFATQ VADLAAQLRE SRHQVQLLEL 1440 RVLVAEQKAQ VTELKLQMAE QQRTAAGCAM VGASEINGGG GGGGGGGRS*

Sequence ? help Back to Top

Protein Sequence Length: 1490 aa Download sequence Send to blast

MSLPPQASNH LTTHPHQPLH HLSPVEVIHH NAMSDKPMDS QGERPPVETP LPSSGALRTT  60
RYDRPQNNVI WLAGVAAAAA AATTNATATV EPPPPPPTTP AEPPSNSENF ARCGGGGQQQ  120
RGSNETLAAS GGGDAGGRGR KALAAATAAT AAPPAPSPSP PSATAAGLLL PSGARIITDA  180
AISIGAGRRF QRAVHVRRKD NREPFSITLD LLRSKSKGFS LDITETAREV GVCATVMKRA  240
CRSLGLINGW PFRVWKRCNY LRDAYLKDAI RMVSEAAALE QQFALSPQHA AKAAEMRSEA  300
ARLRARVEEV DKWWASVVAD PVGRELQGDP FFVNNVVRWT QSKYKEAHRL RAGAARGGGG  360
SSGSGGGGGG TTRSRKRGSG SNGIGGGDGA DAEAAGLGGD EEYGNASGDE DVEGKERRNW  420
GSGGAGDGGG GGGGSTDWEC EGMEGMDGDG VSDDEPGGGG MTTTTTATEA ARRRSSKATG  480
AAAAAAAAVG AETGPEIPDS MVRDAAADAA AVGLDGCYGA DACDDDQCTT APTCDPWVRT  540
LADMTSRPRL QPTWHLNPSG GDAGAHSSAT QRDGSGEAAA AAATQYGTQP PPYWQSSSPE  600
KPHTLALPRL PPPPPPPLHN TNVLMRLQRN DLQLQLQLLQ QQEQQEQQQQ QQVRRRAGER  660
DAKRRKLQVA DAADGGHIEL QPLPPPPRRL SSDSHLQLLQ LSASAPCMPR NQSDHLSRDL  720
VQAQNLNIVA QLDAVRHQIG TADSVLSATI AAAAAAVTNG NCGGGGSGFR RQRSRSITIL  780
GETLQDCRHH QTTEIVPVVQ AGGGSGSGSA AVAEPTAPSG PRTHAWALLG PTSGGDGDDG  840
VLAAAVRGHA GNAVPQFPEQ GSIPSLNELA DVAAASAADG TQPLPLRGSG SGGGNGGAGG  900
NGGGDHAAPS AMSAAAAAVQ RTIASLPHSP YHAMSSLPAV AFASPARTAW LPRVPGGGGG  960
GGGSSGADVL AVFSTAEGEP LRRRQPLNSS PSAPSSPPSP RDRTQPAAAP QALQQQVAPF  1020
RLSRESALSS LDAAAAAVAA VPSPPPSPLS PQHPRDQAHM STRLIRTVHA ASGYADRMRV  1080
HATGAGAAAA TVAAAAAAAG GCPGLSPRLP EPLILQLQHG AQQQQQQQRI GLAAATATAY  1140
LRKQQADSAA AAAAAAPPRT VPFTQQPQGH GAAAAAAASA SPFRPYVPLT PRSSVLLPLM  1200
PQPRLQPQRH QQQRQSSAIQ MTQRAPGVAG PQARSPPRHA LPSPPPPQQQ HASAAAAANA  1260
AGGGCNSSSP KTSPALGAGA SSPPKPAAVA APHAASAGGS AGGGGGALSS ILQELQPLLP  1320
AEVRRALSEL LQSSPRTTAT AAPSITTIVP SAQGRSPRQE QQRQQQQQQQ PQHQQQQPQQ  1380
QQQQQQQQQQ QQQEQHDHPD REQPLQPDHL QAVLMAFATQ VADLAAQLRE SRHQVQLLEL  1440
RVLVAEQKAQ VTELKLQMAE QQRTAAGCAM VGASEINGGG GGGGGGGRS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002951535.1	0.0	hypothetical protein VOLCADRAFT_92128
TrEMBL	D8TYN9	0.0	D8TYN9_VOLCA; Uncharacterized protein
STRING	XP_002951535.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14839	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0030s0108.1.p