PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0030s0108.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family Nin-like
Protein Properties Length: 1490aa    MW: 152752 Da    PI: 8.5939
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0030s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK40.36.4e-132162531147
               RWP-RK  11 skyFslpikdAAkeLgvclTvLKriCRqyG.IkRWPhR 47 
                          sk Fsl i++ A+e+gvc+Tv+Kr+CR +G I+ WP+R
  Vocar.0030s0108.1.p 216 SKGFSLDITETAREVGVCATVMKRACRSLGlINGWPFR 253
                          578***************************8899***9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.787191279IPR003035RWP-RK domain
PfamPF020425.7E-7217253IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 1490 aa     Download sequence    Send to blast
MSLPPQASNH LTTHPHQPLH HLSPVEVIHH NAMSDKPMDS QGERPPVETP LPSSGALRTT  60
RYDRPQNNVI WLAGVAAAAA AATTNATATV EPPPPPPTTP AEPPSNSENF ARCGGGGQQQ  120
RGSNETLAAS GGGDAGGRGR KALAAATAAT AAPPAPSPSP PSATAAGLLL PSGARIITDA  180
AISIGAGRRF QRAVHVRRKD NREPFSITLD LLRSKSKGFS LDITETAREV GVCATVMKRA  240
CRSLGLINGW PFRVWKRCNY LRDAYLKDAI RMVSEAAALE QQFALSPQHA AKAAEMRSEA  300
ARLRARVEEV DKWWASVVAD PVGRELQGDP FFVNNVVRWT QSKYKEAHRL RAGAARGGGG  360
SSGSGGGGGG TTRSRKRGSG SNGIGGGDGA DAEAAGLGGD EEYGNASGDE DVEGKERRNW  420
GSGGAGDGGG GGGGSTDWEC EGMEGMDGDG VSDDEPGGGG MTTTTTATEA ARRRSSKATG  480
AAAAAAAAVG AETGPEIPDS MVRDAAADAA AVGLDGCYGA DACDDDQCTT APTCDPWVRT  540
LADMTSRPRL QPTWHLNPSG GDAGAHSSAT QRDGSGEAAA AAATQYGTQP PPYWQSSSPE  600
KPHTLALPRL PPPPPPPLHN TNVLMRLQRN DLQLQLQLLQ QQEQQEQQQQ QQVRRRAGER  660
DAKRRKLQVA DAADGGHIEL QPLPPPPRRL SSDSHLQLLQ LSASAPCMPR NQSDHLSRDL  720
VQAQNLNIVA QLDAVRHQIG TADSVLSATI AAAAAAVTNG NCGGGGSGFR RQRSRSITIL  780
GETLQDCRHH QTTEIVPVVQ AGGGSGSGSA AVAEPTAPSG PRTHAWALLG PTSGGDGDDG  840
VLAAAVRGHA GNAVPQFPEQ GSIPSLNELA DVAAASAADG TQPLPLRGSG SGGGNGGAGG  900
NGGGDHAAPS AMSAAAAAVQ RTIASLPHSP YHAMSSLPAV AFASPARTAW LPRVPGGGGG  960
GGGSSGADVL AVFSTAEGEP LRRRQPLNSS PSAPSSPPSP RDRTQPAAAP QALQQQVAPF  1020
RLSRESALSS LDAAAAAVAA VPSPPPSPLS PQHPRDQAHM STRLIRTVHA ASGYADRMRV  1080
HATGAGAAAA TVAAAAAAAG GCPGLSPRLP EPLILQLQHG AQQQQQQQRI GLAAATATAY  1140
LRKQQADSAA AAAAAAPPRT VPFTQQPQGH GAAAAAAASA SPFRPYVPLT PRSSVLLPLM  1200
PQPRLQPQRH QQQRQSSAIQ MTQRAPGVAG PQARSPPRHA LPSPPPPQQQ HASAAAAANA  1260
AGGGCNSSSP KTSPALGAGA SSPPKPAAVA APHAASAGGS AGGGGGALSS ILQELQPLLP  1320
AEVRRALSEL LQSSPRTTAT AAPSITTIVP SAQGRSPRQE QQRQQQQQQQ PQHQQQQPQQ  1380
QQQQQQQQQQ QQQEQHDHPD REQPLQPDHL QAVLMAFATQ VADLAAQLRE SRHQVQLLEL  1440
RVLVAEQKAQ VTELKLQMAE QQRTAAGCAM VGASEINGGG GGGGGGGRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951535.10.0hypothetical protein VOLCADRAFT_92128
TrEMBLD8TYN90.0D8TYN9_VOLCA; Uncharacterized protein
STRINGXP_002951535.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1483922