PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0029s0161.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 2367aa MW: 249278 Da PI: 8.9081

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0029s0161.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.7	3e-20	2241	2289	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+ledl+k F++p +AA Lg ++T LKr+CRq+GI RWPhRk+ sl Vocar.0029s0161.1.p 2241 DIRLEDLRKTFNMPAPQAAMALGTSTTNLKRKCRQLGILRWPHRKLDSL 2289 799*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.496	2225	2310	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-18	2242	2289	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 2367 aa Download sequence Send to blast
MQLPYELFPQ HAEAKQAGFS PRTVEAVHVV QPSEDQSFPA AAAANQAPGG GWVPPYIAGA 60 REASGASSHA SRRGPQRPCE PKAQKLHLGG GGGSVEGSWE HVDAQRYDER DVVKVEESLP 120 YKDEVDWTEQ GALHRLGLAA QVAVPWRQRR RLAVWREQES LMQQLLLHAR PVAERGRASG 180 SGGPPATSAA IPSSIPPQNQ SACDTTLRQS YRCRKPLVEP EVASQTDAAG SFEGALSLSP 240 TSPRGPANSD LPWGSVMAPK ANLGDGTGTS PATVRPRLPV QRKPLQPPQR LQPPPQTWRP 300 PGLSELPQPH PHYQQAQCGL QKRQHQQPHQ GNGFVLSRSV LSSLLLAGAA AARRQRGNAA 360 LVYGSGSYPP AHKDFREEVV PTGLSAVRQL TASYGDGVDD RESEEVAAIR KAEAAGSISA 420 AVSARGEYDS VKYDSAAAAA PSSGAAAGVA PAASRQPTDV GHRGATLAAA AAAAGGCGGG 480 DGGGVYINTS GDCHGRTGTT TVGQSVAPPT EGHGRMAVQE KYGYGSDDVQ CVITYEKPDK 540 VPGHARMLKL LQQQQQQQQQ HDLMVTRREM QKNRHYELAS YITDLGCDDG TGLPGGAARE 600 AQRQSLAGGS LIAVSRQHGA TATTTVRATA IAHIAIGQQT QTEAVQKTSA ESGGKPLLPP 660 PAMVAAAAKV AAASSLRQPY IHLKATTPAT PHHANAAAIR GTSGSITTGA RRSESVGASP 720 APTIVRETGT GGLLSGPGAA ATVAEGSPRA AQASPEASFR ICPAENDSPF AAREAAVIAT 780 AAVAPATAVR NGPRRGHLER SEDTSSPDDA AAAGVNIPAA ATEADLFAAA EALLLFKDPL 840 CRGGRDLPGG GGAAATTVAA AGVGVEERPE GVACDSKPVR VRKRRRMSGT PAAEAAQGLP 900 ADAATGVRKP EDMHTHLAPR SRQPTKEQQV TDGCGASELG SGQRPGSGSG QRPGSGSGQR 960 PGSGSGQRPG SGSGQRPGSG SGQRPGSESG QRPGSESGQR PGSESGQRPG SGSGRAKRNK 1020 GAVAGADAGE PPLRPRRSPG GGGGGGSSIQ IIDRSSNRAA AATATATTIT AAATAAPAAV 1080 AAVAPRCVDA ATAVASFDHG DPPMTKDGQW AGASSLPPPQ QRHLLQHHAV LTIPKSPTGN 1140 LNEEALVNDY RRGEMWRRYP SDQRAALVGP GRAPPVNVAT RLLHQNPQHS EPPVRTLIPS 1200 IWFAEQAGSQ ATDQQKVLIN KSLSHQLLLQ QQQQQQQLQP DRQEGEWPQQ QQQQQQPHHH 1260 QQQQQQPRRQ HRQLLQAAQA QNQMRDQHGP PLVPPVSPES NYTQQLRQMD QQQQQQQQAE 1320 WRSEKCGPHA HMPQQHAHQP KQPQQMASQQ EPGSLRADQQ QFQIQIPKQR HGQPQREQRQ 1380 LRHADHQQQQ QVMQQQEQEQ DYGEHVERER QQEQVQPSRI LPSPRSSTLP HAKMRHLAGA 1440 HTDSIFRMPE EQQGLPRNSS GGVSRGQLEG AAALPRRGAP GSAGPSPRPH PHSAPEPHTM 1500 QSHANMSLNI NPASMMDCPG MRAPLDRTQL SAQAVDSRAA LRADRRGEEW EWTSGTATAG 1560 GKGAGAGAGL PAVDLVQWWR ATDDQTETAA AAATAATAAP QSDADAEVRE LEQQLLRMLQ 1620 QQQQQQQPHR QLPSAGLLRE LIDRDAVGFD RMDAIMGPGQ PEPPATGSRL HSNVTGQIDI 1680 PGQQQQQEDH HYHHYHHQQQ HQQQPKQQQE KQRQGEVQEF ARQRLRAALR GTPPSSQPVL 1740 SGAYPDCSGI GPDAGVAGAG VGTEPPFGRS ADGEQQLGTH VRWGASSGGA AAGPWDAAEP 1800 RLERSSRKQR RQEDTEPRVE EEEEEQRRRR KPWQHQHQPQ EQHRGLLQRG QPQLQRALGD 1860 PEEQPLQQQQ PAHHHRNRYH HNHHRHHLPL GFKDDVRSEA MAAPTWSAAR PVNGGPNGSG 1920 GCANSGSGGS AGFVIRSGSH SAVDVEPGQP QQQQQQPATA HRTSGGAVAG RDGDASAASK 1980 LLRDEHSQQQ QQQQQQQPQP QPQQQQALSE MCGAPTHAAA ARQAMQGGLG GDTLRPDSGS 2040 TQGVGPSFAA GGVDATAGRG SGVGGDAGNS TAAAAGKGSA GAAAAVEVGA GSGGSGSAAG 2100 ESTDTHITSG PPPTTAPSPL PGGALAATAA AAAAAAVGAV GECPVPPQPR QRGGTAGTVT 2160 TQQQQQRRRR QRGTRSVGVL RSEHAAIKDG DGDCEGDDDA GAVRDEEEEG GCEAPREGCS 2220 GGGGAAAAAN APAVQRGAGG DIRLEDLRKT FNMPAPQAAM ALGTSTTNLK RKCRQLGILR 2280 WPHRKLDSLN RLRSLVLSDV VEKSQRQALL DSIARNIQQI HQDPNSGLVP SLKNLRQAYY 2340 KRGFDVRARR GGSLVAGTTD SDNCSA*

Sequence ? help Back to Top

Protein Sequence Length: 2367 aa Download sequence Send to blast

MQLPYELFPQ HAEAKQAGFS PRTVEAVHVV QPSEDQSFPA AAAANQAPGG GWVPPYIAGA  60
REASGASSHA SRRGPQRPCE PKAQKLHLGG GGGSVEGSWE HVDAQRYDER DVVKVEESLP  120
YKDEVDWTEQ GALHRLGLAA QVAVPWRQRR RLAVWREQES LMQQLLLHAR PVAERGRASG  180
SGGPPATSAA IPSSIPPQNQ SACDTTLRQS YRCRKPLVEP EVASQTDAAG SFEGALSLSP  240
TSPRGPANSD LPWGSVMAPK ANLGDGTGTS PATVRPRLPV QRKPLQPPQR LQPPPQTWRP  300
PGLSELPQPH PHYQQAQCGL QKRQHQQPHQ GNGFVLSRSV LSSLLLAGAA AARRQRGNAA  360
LVYGSGSYPP AHKDFREEVV PTGLSAVRQL TASYGDGVDD RESEEVAAIR KAEAAGSISA  420
AVSARGEYDS VKYDSAAAAA PSSGAAAGVA PAASRQPTDV GHRGATLAAA AAAAGGCGGG  480
DGGGVYINTS GDCHGRTGTT TVGQSVAPPT EGHGRMAVQE KYGYGSDDVQ CVITYEKPDK  540
VPGHARMLKL LQQQQQQQQQ HDLMVTRREM QKNRHYELAS YITDLGCDDG TGLPGGAARE  600
AQRQSLAGGS LIAVSRQHGA TATTTVRATA IAHIAIGQQT QTEAVQKTSA ESGGKPLLPP  660
PAMVAAAAKV AAASSLRQPY IHLKATTPAT PHHANAAAIR GTSGSITTGA RRSESVGASP  720
APTIVRETGT GGLLSGPGAA ATVAEGSPRA AQASPEASFR ICPAENDSPF AAREAAVIAT  780
AAVAPATAVR NGPRRGHLER SEDTSSPDDA AAAGVNIPAA ATEADLFAAA EALLLFKDPL  840
CRGGRDLPGG GGAAATTVAA AGVGVEERPE GVACDSKPVR VRKRRRMSGT PAAEAAQGLP  900
ADAATGVRKP EDMHTHLAPR SRQPTKEQQV TDGCGASELG SGQRPGSGSG QRPGSGSGQR  960
PGSGSGQRPG SGSGQRPGSG SGQRPGSESG QRPGSESGQR PGSESGQRPG SGSGRAKRNK  1020
GAVAGADAGE PPLRPRRSPG GGGGGGSSIQ IIDRSSNRAA AATATATTIT AAATAAPAAV  1080
AAVAPRCVDA ATAVASFDHG DPPMTKDGQW AGASSLPPPQ QRHLLQHHAV LTIPKSPTGN  1140
LNEEALVNDY RRGEMWRRYP SDQRAALVGP GRAPPVNVAT RLLHQNPQHS EPPVRTLIPS  1200
IWFAEQAGSQ ATDQQKVLIN KSLSHQLLLQ QQQQQQQLQP DRQEGEWPQQ QQQQQQPHHH  1260
QQQQQQPRRQ HRQLLQAAQA QNQMRDQHGP PLVPPVSPES NYTQQLRQMD QQQQQQQQAE  1320
WRSEKCGPHA HMPQQHAHQP KQPQQMASQQ EPGSLRADQQ QFQIQIPKQR HGQPQREQRQ  1380
LRHADHQQQQ QVMQQQEQEQ DYGEHVERER QQEQVQPSRI LPSPRSSTLP HAKMRHLAGA  1440
HTDSIFRMPE EQQGLPRNSS GGVSRGQLEG AAALPRRGAP GSAGPSPRPH PHSAPEPHTM  1500
QSHANMSLNI NPASMMDCPG MRAPLDRTQL SAQAVDSRAA LRADRRGEEW EWTSGTATAG  1560
GKGAGAGAGL PAVDLVQWWR ATDDQTETAA AAATAATAAP QSDADAEVRE LEQQLLRMLQ  1620
QQQQQQQPHR QLPSAGLLRE LIDRDAVGFD RMDAIMGPGQ PEPPATGSRL HSNVTGQIDI  1680
PGQQQQQEDH HYHHYHHQQQ HQQQPKQQQE KQRQGEVQEF ARQRLRAALR GTPPSSQPVL  1740
SGAYPDCSGI GPDAGVAGAG VGTEPPFGRS ADGEQQLGTH VRWGASSGGA AAGPWDAAEP  1800
RLERSSRKQR RQEDTEPRVE EEEEEQRRRR KPWQHQHQPQ EQHRGLLQRG QPQLQRALGD  1860
PEEQPLQQQQ PAHHHRNRYH HNHHRHHLPL GFKDDVRSEA MAAPTWSAAR PVNGGPNGSG  1920
GCANSGSGGS AGFVIRSGSH SAVDVEPGQP QQQQQQPATA HRTSGGAVAG RDGDASAASK  1980
LLRDEHSQQQ QQQQQQQPQP QPQQQQALSE MCGAPTHAAA ARQAMQGGLG GDTLRPDSGS  2040
TQGVGPSFAA GGVDATAGRG SGVGGDAGNS TAAAAGKGSA GAAAAVEVGA GSGGSGSAAG  2100
ESTDTHITSG PPPTTAPSPL PGGALAATAA AAAAAAVGAV GECPVPPQPR QRGGTAGTVT  2160
TQQQQQRRRR QRGTRSVGVL RSEHAAIKDG DGDCEGDDDA GAVRDEEEEG GCEAPREGCS  2220
GGGGAAAAAN APAVQRGAGG DIRLEDLRKT FNMPAPQAAM ALGTSTTNLK RKCRQLGILR  2280
WPHRKLDSLN RLRSLVLSDV VEKSQRQALL DSIARNIQQI HQDPNSGLVP SLKNLRQAYY  2340
KRGFDVRARR GGSLVAGTTD SDNCSA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	842	850	GGRDLPGGG
2	881	885	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002949843.1	0.0	RWP-RK domain transcription factor
TrEMBL	D8TTY4	0.0	D8TTY4_VOLCA; RWP-RK domain transcription factor
STRING	XP_002949843.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0029s0161.1.p