PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0028s0123.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family B3
Protein Properties Length: 522aa    MW: 50499.5 Da    PI: 8.4404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0028s0123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17209305196
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+lt sdv+  gr+v+pk+ ae++  ++++++++t++ +d++grs+++k ++  +++s++y+l+ G  e  +  gL++gD++vF   +
  Vocar.0028s0123.1.p 209 FEKALTASDVSGGGRVVVPKSIAEQYfpKLEQPSGVTISATDLDGRSYTFKWRFwvNNSSRMYLLE-GAGELHRNYGLEVGDVMVFA--Q 295
                          99**************************99999*******************98756666666666.********************..4 PP

                          SSEE..EEEE CS
                   B3  87 rsefelvvkv 96 
                          + +++l+v  
  Vocar.0028s0123.1.p 296 KADGSLMVAG 305
                          4677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-25208312IPR015300DNA-binding pseudobarrel domain
CDDcd100175.22E-21208303No hitNo description
SuperFamilySSF1019361.05E-20208305IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-14209304IPR003340B3 DNA binding domain
SMARTSM010198.1E-14209309IPR003340B3 DNA binding domain
PROSITE profilePS508639.996209309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSQPAETTGQ DGLPSGGLVT GLPSTAPQAI PPSGHIQFDP AMTHLLSGIA AQLQAAAAAA  60
ASASPAAGPA QVDPPQPQPQ TAGTPQAAAP QPQSPPSTSP YAAPDGLALK PEAVPAFGGL  120
GGLGGLGLDL THPGPPLLAC PSVPGPGPGL TPGFGGGSTL AAATAAATAG GAATVAATAP  180
KSAGAPFDPE ALAAALTARM SAAGASIIFE KALTASDVSG GGRVVVPKSI AEQYFPKLEQ  240
PSGVTISATD LDGRSYTFKW RFWVNNSSRM YLLEGAGELH RNYGLEVGDV MVFAQKADGS  300
LMVAGRAASK SDQVKRPPAK RPATAAVAGG SSGGGGAGAG GGGGGQAPRS RDARAPRPRP  360
AVAASAGAAA EGAAAAAAAA QPIPGRLTAG GGPSTAVASA DASLLRGGGG GGRKRKVSSS  420
AATAAAATGA AVGGLAADPT RFRVRPGDEG LTSLAVLDME APSDGIFRAV VQHVSPVSLG  480
VALARNNRWT ATLEVAGEFY QAFFDSREDA VEAVTAAGAS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-212083144112B3 domain-containing transcription factor FUS3
6j9b_D2e-212083144112B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947399.12e-84hypothetical protein VOLCADRAFT_116438, partial
TrEMBLD8TM654e-83D8TM65_VOLCA; Uncharacterized protein (Fragment)
STRINGXP_002947399.17e-84(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-22B3 family protein