PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0026s0128.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 787aa    MW: 84087.4 Da    PI: 5.0079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0026s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09450492345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W  eE  +l ++ +++G ++W+++a+++g+gRt+ qc  + +
  Vocar.0026s0128.1.p 450 QWPLEESRRLMELAEKYGRRHWNKVAAELGTGRTAGQCLAHCL 492
                          6999**********************************98876 PP
2Myb_DNA-binding23.51.3e-07503546145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS.-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR.tlkqcksrwq 45 
                          r  W+ e+d  l  +v+++G++ W ++a+ +g gR  + q+++rw+
  Vocar.0026s0128.1.p 503 RSVWSGEDDVALEALVAKYGTD-WVAVAEGFG-GRfDRHQVRDRWY 546
                          678*******************.*********.8834578*****8 PP
3Myb_DNA-binding513.4e-16558602248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g+W+++Ed +lv+av +lG + W+++ar++  gRt+ qc++r+ ++l
  Vocar.0026s0128.1.p 558 GKWSADEDAQLVKAVDELGQK-WTAVARHVV-GRTARQCRERYVNLL 602
                          79*******************.*********.***********9986 PP
4Myb_DNA-binding27.38.1e-09609650240
                          SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqc 40 
                          g++++eE++ l++a+++l       tW+++a++++ gRt+ qc
  Vocar.0026s0128.1.p 609 GPFSKEEQKVLAEACRELQAAygriTWARVAERLP-GRTDDQC 650
                          79*****************99**************.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.159391445IPR017877Myb-like domain
PROSITE profilePS5129410.24442502IPR017930Myb domain
SMARTSM007172.0E-6447497IPR001005SANT/Myb domain
SuperFamilySSF466896.53E-14450545IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-7450490IPR009057Homeodomain-like
CDDcd001676.45E-7451494No hitNo description
PfamPF002498.2E-8451493IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-7502549IPR009057Homeodomain-like
SMARTSM007171.4E-7502551IPR001005SANT/Myb domain
PfamPF002491.2E-6503546IPR001005SANT/Myb domain
CDDcd001677.79E-7506546No hitNo description
PROSITE profilePS5129420.796552606IPR017930Myb domain
SuperFamilySSF466891.43E-18555652IPR009057Homeodomain-like
SMARTSM007172.4E-14556604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-19558609IPR009057Homeodomain-like
PfamPF002495.8E-15558602IPR001005SANT/Myb domain
CDDcd001671.49E-11559602No hitNo description
PROSITE profilePS500907.805603658IPR017877Myb-like domain
SMARTSM007174.7E-4607660IPR001005SANT/Myb domain
PfamPF002492.3E-7609650IPR001005SANT/Myb domain
CDDcd001676.82E-7610650No hitNo description
Gene3DG3DSA:1.10.10.604.3E-11610659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDAPYADVDD DEEDYFRNLD ALLSSHQALK SILGGTVSGQ PQPHQYTPHQ PSRAPAVRQP  60
PHSNGDHDES GSEGIEGDDD SEYEPSSEPE SESALEQMEA AEAAARGVLD AEADIDQLVG  120
DADDAGGIAG GDNDGFEEGE GEGEEDECNN GDDGGGGSSD ADRDLESYIV RPPGEVLPPG  180
SRLERLYAAL DTNREIQRQL SLMLERLDMH SNTSYLLERR VREQKVVTKP RTAEQRAIAV  240
VRSAAAQTAA AAAAAGVALP AAPQPPQTSR FWRVAGALPA PTSEWTRLAA AQQLPLRPYD  300
RVRWPLRFVD ALNKGLTLEV QSILTKQLLD RIQQQQQQRA AAGGGGGGED RAAGRGAAAA  360
AAAADGAPAA GATAAAATAA GAGALPTDMQ SLQEQLQRIA SVRPDGPEAI PVILKLDDEA  420
WARVAASHRV GRSGTECAAY YRHNLRPGLQ WPLEESRRLM ELAEKYGRRH WNKVAAELGT  480
GRTAGQCLAH CLRWSRYDRR PERSVWSGED DVALEALVAK YGTDWVAVAE GFGGRFDRHQ  540
VRDRWYGVMT ASGPRRVGKW SADEDAQLVK AVDELGQKWT AVARHVVGRT ARQCRERYVN  600
LLQPGLKFGP FSKEEQKVLA EACRELQAAY GRITWARVAE RLPGRTDDQC SRAYEGLVKH  660
DKAHIGHKRG GGSHQLLQDP GGGSSRARNA RKRRRSGGVE EGGAEEATET GGEEDHRAGL  720
PDQEGQGALG ASGPGGAAAT SPQVTEGEGG VEGDGGGSGG GEGAAGGRVV EGRDGEEQQM  780
VGPRRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-195036486145MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-195036486145MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690694RKRRR
2690695RKRRRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952676.10.0hypothetical protein VOLCADRAFT_93469
TrEMBLD8U2740.0D8U274_VOLCA; Uncharacterized protein
STRINGXP_002952676.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.32e-29myb domain protein 4r1