PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0025s0194.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bHLH
Protein Properties Length: 422aa    MW: 45462.1 Da    PI: 4.9416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0025s0194.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13206266455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksLq 55 
                          +h+ +E++RRdriNs ++eLrel+P++s          +   +  K  +L  +++ +k+Lq
  Vocar.0025s0194.1.p 206 SHSTVEKQRRDRINSLIDELRELVPPQSrsnnngatgEGLEARRPKHVVLADTIQLLKHLQ 266
                          7*************************888*******9899999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-12201272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.052202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-11204270No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12205269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10206266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-9208271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.46E-9336398No hitNo description
Gene3DG3DSA:3.30.70.2601.1E-6339396No hitNo description
PROSITE profilePS5167110.509339420IPR002912ACT domain
CDDcd048732.03E-8340403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSDSLDFGLG DSQYVFTDRE LNELLGVIEQ KAAGAEAELD VLDFFRTEGK EPLALQFQPR  60
SHKDDALEQS VTTTVKQEDL PVSALSSALA SPVETPALQQ SGQDQPYFSS NAAEISILPM  120
PTGASLHAFA LPGTMVGAGA HSFVSSLVAP PPVAPTQAQL TQPQPLAQLL PLAAAPLQLA  180
RLPSSAVNSR GSVPQPSVVE VKGQISHSTV EKQRRDRINS LIDELRELVP PQSRSNNNGA  240
TGEGLEARRP KHVVLADTIQ LLKHLQQKLQ VTTVDQLAYN HVNGVKNQED DTANSEGKSK  300
GSSSQDDVDV LGAPQMPHIP CQMTQNAGVT VERGPDCYYV QVKCRDRKGL LSDIINALRQ  360
LPLEIRTAAV TTTNGTVRDV FEVKLDDASL TPEDVQNLVH DALFQQHVVA YDTYAGKRPR  420
V*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957601.10.0hypothetical protein VOLCADRAFT_98692
TrEMBLD8UG120.0D8UG12_VOLCA; Uncharacterized protein
STRINGXP_002957601.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013