PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0025s0134.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 2162aa MW: 219240 Da PI: 6.5685

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0025s0134.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	78.5	9.7e-25	54	129	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++ l ++k y++rh vC+ h+ +++vl++++e rfCqqC++f +l fD + rsCr rL + n+ + ++ Vocar.0025s0134.1.p 54 ACQVPGCTELLVDCKPYFKRHLVCQSHAVSAAVLIDNVEMRFCQQCAKFERLAAFDGGNRSCRLRLFRRNAAKYRS 129 5*******************************************************************99987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.1E-23	51	116	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.88	52	129	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-22	54	130	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.9E-21	55	126	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2162 aa Download sequence Send to blast
MSGSSDSQQA AHGWEASGTL WNPITMTCHA TGPVGDGITG KVQKSRGRSI SRAACQVPGC 60 TELLVDCKPY FKRHLVCQSH AVSAAVLIDN VEMRFCQQCA KFERLAAFDG GNRSCRLRLF 120 RRNAAKYRSQ LVKRAAAHHT SDELEDDQPT REPPQDNKPQ RQKPRAPFAS PNDATAERAD 180 TDSAAAGAAA IDGVGRRGGG HPHPRTSPSP AQGALSGGSS GEPDTRCWDA APGLPYSWVP 240 HADAEDWSSQ LRSGPTKRTK LAVSGSASVA ADVTAGAEKR ADWEVAGACD VAMTTPGGSL 300 PDWQSVPYSR QKKGGQQQQQ QQQRVLLARP RDESNSESRT LPSYGNSDVN DEVDAALAPL 360 TSGLRLDLHS EDTTEPSRSR AGAWGGAAAS DPPPTSSISA ARSGGSPNMQ QHPQVLQLCQ 420 PPVAHHPTHQ QHQQHQQHQQ HQQQQNTLRL LPMQQQQQQQ SQALTCWQDP AKGHVAPSRV 480 GRVLQGNHGG GDAALYDSIS GLGTEPAQRS DAYVSAAAAT AAEAAITRRL RGEQPPFPGA 540 PMLSLGLQTD MGAVGGPGGG SAAAAAAAAA ADVPLALQAL SNRADLSYTD RQMLESLLGI 600 SPGPVAAFRG MPSSTGASLD EQLYDIMHDV MREGGGDSGW FRDPGAATAA ADVGKQAAAA 660 GAAAAGSVAA ACAYLCMSER RAGPPALDGG GGSDLPYNQD SAAGAFHAGG NNRVPGGQRA 720 VPDWLPPAAP SAASAVEDST ANAAAAAAAT AGHMPAAAER SGPAAAMEQS RQHHDQRPMP 780 NQALTDLQLQ QLEQQQASLE QQLQQLQHRK LQLQMQQQHR QQQQPSPPPP PPPPLQQQQQ 840 SHAATAPASA PTPSGAMAPS AGQLRLAAAD PALWPDGSAA AAAAAPAAVA ATAAGAGQRH 900 LGSAGSGGPP PGTSPFPPGP PVNLHPHHDS PEYPPHHPHH SYYNGRHPHE HYHLQHHHTY 960 THHHQHQQYQ QQYQQHMRGA AISATGVPGE SYNNTHVNAH AQRHNNTHMN SQQHVHPLPG 1020 PQGPVGTSGA VLPATAAAAP PPQQQLAPSA PPPPQPLAPP AAMDSHRNQD MWMASAWGPS 1080 APPLGRDGGG GGGSRRDLLY PGRTGGGDGP GGAATAGVMM LGGPRAVARE ATESPWDDYY 1140 HSPYDTIRLS FKMRDCNPYD MDPAMTQGLL HRIVSEGGRC AAPAPLASVR PGCVILVINA 1200 TVRPPPLPSS PPPPPLPLPA AAAASEVAVA ATATASSSLS VDGAHAGVAG DSCDGGGDRG 1260 GGDGDGDFSV RSPNVMEAVR QLATLNETAV VVQAGGSSSS SCQVITLDKN GREVSPLLLL 1320 EGGGSGAPTS AGAAGGDGSG AGSASSSSCP PPPPAPPAPP PSLTRASMAA VYIGARGSFQ 1380 VYGSGLSGPN VEFWGRFQGV HYQLQAAAGL FAALLSEWLP LLVVPSERVA AEINGLQSRL 1440 PPASLRRLLV DLGTLLDVLP LLAQPVNGVC PVLGQLGAGS SGCSKNTWRS SSIEPEYGPS 1500 GGGDGGGAGY CGAGGGRAES CDGAGSDASA TEAGVLSYDT SFAETLSTLA SSSQCKSSTT 1560 PAANSGISAL SAAVGCSGAR AAAAALNGSG RAAVAAALTS AIAADSGSSY SHAAVATTAA 1620 AAAAAAAAAD GSAPIRLSAH ILTALAERAA AATAGGGGGG GLPPGAAGVA GYGCIGGDGG 1680 SLRRLLRDFD PSELLANRND ETVVQQVLCP EAVRQLLARA VSVTMFFAQR ALVDSALCAV 1740 SALSELYYAF PDLMTSEQAP RPQRGCPSLM HAAVRSRSLA LMLALAKCEP VLGANVSLTW 1800 PGPGGLTPLH LVALLGQPYV ITGLQFAVPG LRELWHSLRD DNGVTPADLL SQALLPSYSG 1860 GGAGGGSSAS TAVRWPWYGG GAPLPQWTAA VPTAASSKPT MVLATAPRAP LAATAVLAAP 1920 PPRSVVPSSG AVGPLVDMTS DQGSDCFLSP LPSPAPLSPV MQGFSPFVPF GDGHSNAAAA 1980 AAAAAAPPPP LRTFSGPELA TPELTLPFKS EGQVAGPAAG AVTQEVVEVV DAYGSGDPTL 2040 AEAAAAAAAL AELTLARLRN GISPRGSTTE SLMVDDADGA PAVGGAQPLP APLATAAQAS 2100 QEPLAAAKEG EDPRIGLPDS RQLPAGDGGD SGGGGGGSGG GGSFSGLANL ARSVVRRLMP 2160 R*

Sequence ? help Back to Top

Protein Sequence Length: 2162 aa Download sequence Send to blast

MSGSSDSQQA AHGWEASGTL WNPITMTCHA TGPVGDGITG KVQKSRGRSI SRAACQVPGC  60
TELLVDCKPY FKRHLVCQSH AVSAAVLIDN VEMRFCQQCA KFERLAAFDG GNRSCRLRLF  120
RRNAAKYRSQ LVKRAAAHHT SDELEDDQPT REPPQDNKPQ RQKPRAPFAS PNDATAERAD  180
TDSAAAGAAA IDGVGRRGGG HPHPRTSPSP AQGALSGGSS GEPDTRCWDA APGLPYSWVP  240
HADAEDWSSQ LRSGPTKRTK LAVSGSASVA ADVTAGAEKR ADWEVAGACD VAMTTPGGSL  300
PDWQSVPYSR QKKGGQQQQQ QQQRVLLARP RDESNSESRT LPSYGNSDVN DEVDAALAPL  360
TSGLRLDLHS EDTTEPSRSR AGAWGGAAAS DPPPTSSISA ARSGGSPNMQ QHPQVLQLCQ  420
PPVAHHPTHQ QHQQHQQHQQ HQQQQNTLRL LPMQQQQQQQ SQALTCWQDP AKGHVAPSRV  480
GRVLQGNHGG GDAALYDSIS GLGTEPAQRS DAYVSAAAAT AAEAAITRRL RGEQPPFPGA  540
PMLSLGLQTD MGAVGGPGGG SAAAAAAAAA ADVPLALQAL SNRADLSYTD RQMLESLLGI  600
SPGPVAAFRG MPSSTGASLD EQLYDIMHDV MREGGGDSGW FRDPGAATAA ADVGKQAAAA  660
GAAAAGSVAA ACAYLCMSER RAGPPALDGG GGSDLPYNQD SAAGAFHAGG NNRVPGGQRA  720
VPDWLPPAAP SAASAVEDST ANAAAAAAAT AGHMPAAAER SGPAAAMEQS RQHHDQRPMP  780
NQALTDLQLQ QLEQQQASLE QQLQQLQHRK LQLQMQQQHR QQQQPSPPPP PPPPLQQQQQ  840
SHAATAPASA PTPSGAMAPS AGQLRLAAAD PALWPDGSAA AAAAAPAAVA ATAAGAGQRH  900
LGSAGSGGPP PGTSPFPPGP PVNLHPHHDS PEYPPHHPHH SYYNGRHPHE HYHLQHHHTY  960
THHHQHQQYQ QQYQQHMRGA AISATGVPGE SYNNTHVNAH AQRHNNTHMN SQQHVHPLPG  1020
PQGPVGTSGA VLPATAAAAP PPQQQLAPSA PPPPQPLAPP AAMDSHRNQD MWMASAWGPS  1080
APPLGRDGGG GGGSRRDLLY PGRTGGGDGP GGAATAGVMM LGGPRAVARE ATESPWDDYY  1140
HSPYDTIRLS FKMRDCNPYD MDPAMTQGLL HRIVSEGGRC AAPAPLASVR PGCVILVINA  1200
TVRPPPLPSS PPPPPLPLPA AAAASEVAVA ATATASSSLS VDGAHAGVAG DSCDGGGDRG  1260
GGDGDGDFSV RSPNVMEAVR QLATLNETAV VVQAGGSSSS SCQVITLDKN GREVSPLLLL  1320
EGGGSGAPTS AGAAGGDGSG AGSASSSSCP PPPPAPPAPP PSLTRASMAA VYIGARGSFQ  1380
VYGSGLSGPN VEFWGRFQGV HYQLQAAAGL FAALLSEWLP LLVVPSERVA AEINGLQSRL  1440
PPASLRRLLV DLGTLLDVLP LLAQPVNGVC PVLGQLGAGS SGCSKNTWRS SSIEPEYGPS  1500
GGGDGGGAGY CGAGGGRAES CDGAGSDASA TEAGVLSYDT SFAETLSTLA SSSQCKSSTT  1560
PAANSGISAL SAAVGCSGAR AAAAALNGSG RAAVAAALTS AIAADSGSSY SHAAVATTAA  1620
AAAAAAAAAD GSAPIRLSAH ILTALAERAA AATAGGGGGG GLPPGAAGVA GYGCIGGDGG  1680
SLRRLLRDFD PSELLANRND ETVVQQVLCP EAVRQLLARA VSVTMFFAQR ALVDSALCAV  1740
SALSELYYAF PDLMTSEQAP RPQRGCPSLM HAAVRSRSLA LMLALAKCEP VLGANVSLTW  1800
PGPGGLTPLH LVALLGQPYV ITGLQFAVPG LRELWHSLRD DNGVTPADLL SQALLPSYSG  1860
GGAGGGSSAS TAVRWPWYGG GAPLPQWTAA VPTAASSKPT MVLATAPRAP LAATAVLAAP  1920
PPRSVVPSSG AVGPLVDMTS DQGSDCFLSP LPSPAPLSPV MQGFSPFVPF GDGHSNAAAA  1980
AAAAAAPPPP LRTFSGPELA TPELTLPFKS EGQVAGPAAG AVTQEVVEVV DAYGSGDPTL  2040
AEAAAAAAAL AELTLARLRN GISPRGSTTE SLMVDDADGA PAVGGAQPLP APLATAAQAS  2100
QEPLAAAKEG EDPRIGLPDS RQLPAGDGGD SGGGGGGSGG GGSFSGLANL ARSVVRRLMP  2160
R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	2e-15	51	137	2	88	squamosa promoter binding protein-like 7

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2130	2142	SGGGGGGSGGGGS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11589	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-17	SBP family protein

Link Out ? help Back to Top
Phytozome	Vocar.0025s0134.1.p