PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0023s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 585aa MW: 61915.2 Da PI: 10.1189 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.2 | 2.4e-14 | 308 | 367 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....kr...krfslgkfgtaeeAakaaiaarkk 52 s++kGV++++++++W+A+++dps + kr ++f+lg ++t+ eAa+a+++a+ Vocar.0023s0210.1.p 308 SQFKGVSRHRNTNKWEAHLWDPSVRRvgfrgKRawgRQFYLGAYDTEVEAAQAYDRAAIV 367 789******************999444565544678**********99*********975 PP | |||||||
2 | AP2 | 29.1 | 2.5e-09 | 413 | 461 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 s+y+GV++++ + W+A+I + g + +++lg f +e Aa a++ a+++ Vocar.0023s0210.1.p 413 SQYRGVTRHRASDLWEARIGNmF---G-KNYVYLGLFNLEEAAAMAYDFAALY 461 78****************99988...3.59*********77777777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.24E-15 | 308 | 378 | No hit | No description |
SuperFamily | SSF54171 | 3.47E-14 | 308 | 380 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.635 | 309 | 378 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-14 | 309 | 379 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-9 | 309 | 369 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-20 | 309 | 384 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-6 | 413 | 463 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-13 | 413 | 472 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-13 | 414 | 472 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-15 | 414 | 478 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.513 | 414 | 472 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MNEFAAAGAA GAAGAAGGIT AAGSCCQAAA EAGSLLDTVY GNAYGAPAAP PTSCGPLGPP 60 VAPPPHHRGT QHFQLFQQYQ QHYRRHEQQY RQYTAEPQPQ LQRRTDPRSG TVNGGVTEAG 120 RGVSGAPSFA DNLDHWDRGQ EGRGNVEAGN AVAGLATAAT ASGAAAFDSS LSHPPVPSQQ 180 HPQPQPQPLG STSSLEVAPG GPMQVGLPTA PTGGSPGIGL APNGEQLQAA LLKRLRKLSL 240 KRGIAGNKLI QRVISGKAPR ARSDVRGTLR IRTRSAAIDN PYSGAVNARV CKIIPSQLVR 300 RKRDSASSQF KGVSRHRNTN KWEAHLWDPS VRRVGFRGKR AWGRQFYLGA YDTEVEAAQA 360 YDRAAIVFWG VGAITNFPLE VYGEELESLL QLTKEDLMNS LRRRAYGFSR GESQYRGVTR 420 HRASDLWEAR IGNMFGKNYV YLGLFNLEEA AAMAYDFAAL YRDGPTALTN FHPEGYLHET 480 TGALLPFSWL PEVVKSGFAK WPKAVLSAAG DPRAAQPNNR NQRPAAATPV AGPATPSLGK 540 SSGPWCQRRP GGPTVEAAAA AAGGDLNTQR GSGENGPAAG TLEI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002957429.1 | 0.0 | pathogenesis-related genes transcriptional activator | ||||
TrEMBL | D8UFM6 | 0.0 | D8UFM6_VOLCA; Pathogenesis-related genes transcriptional activator | ||||
STRING | XP_002957429.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-43 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0023s0210.1.p |