PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0023s0184.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 231aa MW: 25254.5 Da PI: 10.4642 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32 | 3e-10 | 36 | 91 | 8 | 53 |
AP2 8 wdkkrgrWvAeIrdpse.ng......kr...krfslgkfgtaeeAakaaiaarkkl 53 +++ +g+W+A+++dp+ ++ +r k+++lg + t+ eAa+a++ a+ + Vocar.0023s0184.1.p 36 RHRGTGKWEAHLWDPTVrRKkrtqggRRawgKQVYLGAYNTEVEAARAYDMAAIVF 91 57889*********99975567777744688**********99*********9765 PP | |||||||
2 | AP2 | 31.4 | 4.7e-10 | 137 | 186 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV++++ + W+A+I + g + +++lg f + e+Aa++a ++ ++ Vocar.0023s0184.1.p 137 SQYRGVTRHRASDLWEARIGNmF---G-KNYVYLGLFES-EQAAAMAYDFAALYR 186 78****************99988...3.59*********.777777766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.447 | 24 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-11 | 36 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.34E-12 | 36 | 100 | No hit | No description |
Pfam | PF00847 | 1.9E-5 | 36 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-13 | 36 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-11 | 37 | 102 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 4.05E-13 | 137 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.5E-7 | 137 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-16 | 138 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.882 | 138 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-13 | 138 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSAFFTPISS PNPQARRTPT APIEPRPDPP PPPPKRHRGT GKWEAHLWDP TVRRKKRTQG 60 GRRAWGKQVY LGAYNTEVEA ARAYDMAAIV FFGSAAKPNF SLEEAYGAEL ASLSKMGKED 120 VVNMLRRQCR SFSRGESQYR GVTRHRASDL WEARIGNMFG KNYVYLGLFE SEQAAAMAYD 180 FAALYRGGPS SLTNFDPRSY LQGSTGRTTA AAAAAAATGV PNLPTAVTTM * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002957465.1 | 1e-170 | pathogenesis-related genes transcriptional activator | ||||
TrEMBL | D8UFK5 | 1e-168 | D8UFK5_VOLCA; Pathogenesis-related genes transcriptional activator | ||||
STRING | XP_002957465.1 | 1e-169 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-37 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0023s0184.1.p |