PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0023s0128.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 203aa MW: 21971.4 Da PI: 11.208 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.7e-14 | 130 | 191 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng......kr..krfslgkfgtaeeAakaaiaarkkl 53 s++kGV+w+k++++W+A+++dp+ ++ ++ k+++lg + t+ +Aa+a + a+ + Vocar.0023s0128.1.p 130 SQFKGVSWHKNTKKWEAHLWDPTVpRKkdhpgkRNrgKQYYLGAYKTERMAARAFDIAAIVF 191 789******************9999777899963378**********99********99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-12 | 130 | 200 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.20E-13 | 130 | 199 | No hit | No description |
Pfam | PF00847 | 3.8E-9 | 131 | 193 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-11 | 131 | 199 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-10 | 131 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.633 | 131 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEPVPSNGFI QSLGLDPSVS PPNDTTPPER PLPAVAVPTS SRNAPPVRGT ATKRSCHRRR 60 GGSSTNKRRG KASTTTRAGN RSSGNVGSNH LDHGHGGGLE GDDPVNATTM ENTVNSQTRR 120 TDSGPINKSS QFKGVSWHKN TKKWEAHLWD PTVPRKKDHP GKRNRGKQYY LGAYKTERMA 180 ARAFDIAAIV FWGLDTTINV SH* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002952021.1 | 1e-119 | hypothetical protein VOLCADRAFT_92648 | ||||
TrEMBL | D8U070 | 1e-118 | D8U070_VOLCA; Uncharacterized protein | ||||
STRING | XP_002952021.1 | 1e-119 | (Volvox carteri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 3e-16 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0023s0128.1.p |