PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0023s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | MYB | ||||||||
Protein Properties | Length: 954aa MW: 100594 Da PI: 5.3169 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++v+ G +W+tIa+ ++ gR++k+c++rw ++l Vocar.0023s0018.1.p 36 RGPWTPEEDKQLTELVTNCGAQRWSTIAESIP-GRSGKSCRLRWWNHL 82 89******************************.***********8886 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.4e-13 | 88 | 132 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++++ Ed +v+ ++++G++ W+ Ia+ ++ gRt++ +k+rw++ Vocar.0023s0018.1.p 88 KGPFSEFEDAVIVRSHEKYGNK-WSVIAKLLP-GRTDNAVKNRWNST 132 799*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.828 | 31 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-29 | 35 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 37 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.91E-14 | 38 | 82 | No hit | No description |
PROSITE profile | PS51294 | 20.641 | 87 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-11 | 88 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-9 | 90 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 90 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 954 aa Download sequence Send to blast |
MTGRKAAESG RPARPRASAK RQSSFREDDI GEGEKRGPWT PEEDKQLTEL VTNCGAQRWS 60 TIAESIPGRS GKSCRLRWWN HLSPQVKKGP FSEFEDAVIV RSHEKYGNKW SVIAKLLPGR 120 TDNAVKNRWN STLRRKHTGG TLNNKFVDNY PELEPLMADP EAAREAAEYS SSLNEGSGEG 180 FALSGTNICT GSEEDDVHHD HLEAEEDEDE RAEEEEAVEA NGEGQGVESN GDHHPTAEQA 240 VGEEPQLPSL SAVMTARRSN VARRGAAVAE TKHAPLSRSL STGGHHNNHD GRQQQQPHGR 300 RATLARAAHR AACTRKWADS TEENEEENEV VVETEDDGKP LPPTSQGTLE GGLSLSPSCS 360 PVPAVPAAAA AAASAAALPV AAAAVATAAA LCDHMPSAAG SSGSVTAMVG EVHPAVDEAH 420 PHPHLAQCCS AAAPAAPAAT RLQSTGAPSP PLSHHPTPPN PHPKQQHQQP SSAQASSPRT 480 APADCLNRLD LDLFPPASKR VRTSSVCTAT MTTTGQPLAR QTSTSASPLE LPSLPAPCQL 540 LATATTPAVT ASAAGAPPYP IRSVDLVMTA PSAGCLAAVR FSSVAGVGFK AEIAASASTD 600 RCSARSPSVP LLAPLGDSGG GSSSLLGSYV ALPSGAAQPL QQQLLLSHQV QTAEGLQPVA 660 SMPTLLDSPP EDDLEWQSIM ESLETTMQNE DVFDTPEGWA DALLQQQQLP QLQQSQQLLQ 720 QQVLLQQQQQ QQLQHIEQQQ QALAAQSGLR LVNTSSSSSS SCYSGAPSSA LSGGCSGLPS 780 WASSCSPQVP AAPLATAAAA TSCHLTQMPL QLQPITLLPS SELTTAQRRH RGMLAPPLPQ 840 QQQQQQLLFA TQEQQQQQLH IRSVLLGESP WAGGPAADLN MAMPFQLDLA GEGSCAGYLL 900 NHQQQQQQQP IMALFQPLQA TTTCSYIPST SSYDFGRFGG GGGCFSDPMA FFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-38 | 36 | 136 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-38 | 36 | 136 | 4 | 104 | C-Myb DNA-Binding Domain |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-40 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0023s0018.1.p |