PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0022s0210.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1106aa    MW: 112745 Da    PI: 6.0582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0022s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13728769145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +g +T+eEd +l+d+v q+G + Wk I +++g  R ++qc++rw+
  Vocar.0022s0210.1.p 728 KGHFTEEEDRRLLDLVDQHGRK-WKIIGQELG--RLPEQCRDRWR 769
                          689*****************99.********8..999*******8 PP
2Myb_DNA-binding26.12e-08780880246
                          SSS-HHHHHHHHHHHHHTTTT.........................................................-HHHHHHHHTTT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.........................................................tWktIartmgkg 34 
                          g+W++eE  +l   v+++                                                            +W++Ia++mg +
  Vocar.0022s0210.1.p 780 GPWSQEEMARLQVIVQEHLDSkaraevlvdtglsmaaalgvaagggpdgglglggvgapggkgpgsvkgsrrivldgiNWEAIAARMG-T 868
                          8999999999999999998779999999999999999999999999999999999999999999************************.* PP

                          S-HHHHHHHHHH CS
      Myb_DNA-binding  35 Rtlkqcksrwqk 46 
                          R + qck++w++
  Vocar.0022s0210.1.p 869 RNPQQCKEKWYD 880
                          **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071729654724IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-14702770IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-13721770IPR009057Homeodomain-like
PROSITE profilePS5129418.68723776IPR017930Myb domain
SMARTSM007171.9E-10727774IPR001005SANT/Myb domain
CDDcd001679.80E-9731769No hitNo description
PfamPF139216.6E-16731790No hitNo description
Gene3DG3DSA:1.10.10.601.2E-15773797IPR009057Homeodomain-like
PROSITE profilePS500907.039774882IPR017877Myb-like domain
SMARTSM007172.4E-8778884IPR001005SANT/Myb domain
PfamPF002498.6E-6850880IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15856887IPR009057Homeodomain-like
CDDcd001671.75E-5857879No hitNo description
SuperFamilySSF466899.17E-12862946IPR009057Homeodomain-like
PROSITE profilePS500907.608884937IPR017877Myb-like domain
SMARTSM0071715888939IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MQLQPELVIH HDNSLRNQDG HTAIVVAYNH AGQQLDASAL DATSLAATLE LHSVHALDQH  60
AQAVMDHATQ AAMDHVQALE HAQAAIQQAQ AALEHAQAMG LEHHAHMVDE AALSASAIVA  120
HLDQQKLLDA QQAQHAAVSH HLAAAAAAAA AASAGAAAAE DPEEQQKQLD ELAAAQAQLQ  180
HLLPLDLTGA DPTAAQLHLA GIMQQALQVV EQQSALQQGL HALPPGDLAV QQSALLEQAM  240
ALAALAPLAG TMPGMDATGQ PMFQQVSDAG AAAAAAAAAA AVAAAAAASV PPSVIAAQQQ  300
QPSGLCLVQQ QQHAVRRDRR KKLGEGDSMD GGRVVGDRKT RKRSEKKRKR AERELQEAAV  360
GDDDDDDDYA STGLAAAAAA AAKLARVQAA QAAAVAAAAA AAGAVGAPST GGIALAPAPS  420
VGSAAAGGPQ GGSQQDLPGG AEPIGHDAMG LDSGDGFRNQ AQSLVAALLA AAVPTQGSAP  480
YQGLGSSYGG LGSGGVPGLD PQALAVAAAA AAAAAPQLPG LPLGLFGGNA GQLLGPGAAG  540
GYGSMTDDGS AGLDGLQDTV QVSVDGHQQQ HSDATAAAAA AAAVAAAAAA QAAQQQHHQQ  600
AHQQQEGAVG LQTTTAAAGL LDPAMMELNK PQRGGPKRMT TMSWNEDLQR TDVKSGPFSQ  660
AESDAAKAAA RQYAEAHGKS CTDWSWMFSL QREGMHGMIT MISAAVPHRT RKSLWAHLTR  720
VLHSGNYKGH FTEEEDRRLL DLVDQHGRKW KIIGQELGRL PEQCRDRWRH IGINQQRTTG  780
PWSQEEMARL QVIVQEHLDS KARAEVLVDT GLSMAAALGV AAGGGPDGGL GLGGVGAPGG  840
KGPGSVKGSR RIVLDGINWE AIAARMGTRN PQQCKEKWYD ALCPSMVSRG EWGPGDDRRM  900
LRSLLLSGAT REWEVNWDSL VEGRTAPQCK RRWRLMLKCV PDHRNMEFDA VLQFLIDKYA  960
PKLRSLQAQQ AEQLMHQQET LQQMLHLQGM GLVPSAAGAD AGGAGGGGPL DVGGQLGVGP  1020
GLGPLDAQQQ QQAAAAAAAA AAALAGQTGA GGVMGLPGLD GNAAHLAAAS QEMLAAAAAA  1080
AAAAAAAAAG AAGNLENGSG MVAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341348KRSEKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952373.10.0hypothetical protein VOLCADRAFT_105501
TrEMBLD8U1940.0D8U194_VOLCA; Uncharacterized protein
STRINGXP_002952373.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-19MYB_related family protein