PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0022s0047.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bZIP
Protein Properties Length: 463aa    MW: 48765.7 Da    PI: 6.3708
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0022s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.2e-15208268363
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e++r+rr++kNR+ A rsR+RKka   eLeek k++e+eN +L+  le+   e a+lks++
  Vocar.0022s0047.1.p 208 ERRRQRRLAKNRVTAARSRERKKAMWSELEEKLKNIENENAQLRAMLEQFARENASLKSQL 268
                          789*******************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-12205270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.495208271IPR004827Basic-leucine zipper domain
PfamPF001706.9E-13208268IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-14210269No hitNo description
SuperFamilySSF579591.35E-10210268No hitNo description
CDDcd147041.40E-19211262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010187Biological Processnegative regulation of seed germination
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDVEGIDLVA LLEGGPVPQL PDDLDDLFTD DLLQFLNAPE SDQPSSNVQP QELVAPTPAA  60
LVEPVATAPC VSSSSSQSEV ATSPSLAQQP ALPAPLACGT EASFGPLQVQ QALAVPRLVT  120
TAAAQQMWTA MLQAAYGAGP AAGACVDDAK ARSLQAAGTS RQGSRDCSTD SSDTDHDDHE  180
MVDSKSKTTG NKRKAPEVDW RQIDDPAERR RQRRLAKNRV TAARSRERKK AMWSELEEKL  240
KNIENENAQL RAMLEQFARE NASLKSQLLT ITRAGAAVGG AAGVSQARAG KAMDPAVILP  300
VFIVTLLVVC SLLPGDKACA LLGSVLPLAL LAGMLGGSKG GEAAHPCFES LFRLLHMLGT  360
LITGSSKLLQ RSFRRLCFDR HRYLGRSWMQ RLAGMPVPVC DPGIASSSST PAEDPPYLAF  420
GKNPALAGPV SATVEKPGAP LLQAAIKLEP ASSGLMGFGF RC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200213RQIDDPAERRRQRR
2207214ERRRQRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00294DAPTransfer from AT2G36270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957643.10.0hypothetical protein VOLCADRAFT_121646
TrEMBLD8UG370.0D8UG37_VOLCA; Uncharacterized protein
STRINGXP_002957643.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP577378