PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0021s0170.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 408aa MW: 44149.1 Da PI: 5.1969

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0021s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.8e-10	194	237	3	46
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 + +++ +++NR+A++++RqRKk+e+ L++ v+ L+a+ +Lk Vocar.0021s0170.1.p 194 RQRNAEQMESNRVAQQKYRQRKKQEQSVLQQAVDLLTAQVATLK 237 56778899*******************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-6	187	238	No hit	No description
SMART	SM00338	0.002	188	259	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.2E-8	193	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-6	196	237	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MDRFDSTNLF SIFKNEEGEN LLPFDEMAAL LDLGEIDIPT DVPLINTAPT VTTEGPATSV 60 LRDGQVLPST SGAAESAHTM AAGWASRPSS DGGGETDGSD IDMAQQVPQV YEQRQPPQPS 120 QQPHHFQHLQ PYYDERDGED VEEEPQPTSS TPGTAAFSGG PEGRRRRGST GSAGGGTGAR 180 GAANKATSGV KKRRQRNAEQ MESNRVAQQK YRQRKKQEQS VLQQAVDLLT AQVATLKAVE 240 VRAGELEATN ISLQETVRQQ GASIAVLQQQ NASQAAELEA VRGALHSSQS QVAVQGKIIL 300 DQQAKLRLQE QVIASLKDRL KERIDEAMQH VVPGTVCEKM VAAVKATLYD AKDVHGLQET 360 LAQLPEHLVN EMCKNIFQVC KEFWPEMRAR CSQQVGGSNS CHMTGTA*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MDRFDSTNLF SIFKNEEGEN LLPFDEMAAL LDLGEIDIPT DVPLINTAPT VTTEGPATSV  60
LRDGQVLPST SGAAESAHTM AAGWASRPSS DGGGETDGSD IDMAQQVPQV YEQRQPPQPS  120
QQPHHFQHLQ PYYDERDGED VEEEPQPTSS TPGTAAFSGG PEGRRRRGST GSAGGGTGAR  180
GAANKATSGV KKRRQRNAEQ MESNRVAQQK YRQRKKQEQS VLQQAVDLLT AQVATLKAVE  240
VRAGELEATN ISLQETVRQQ GASIAVLQQQ NASQAAELEA VRGALHSSQS QVAVQGKIIL  300
DQQAKLRLQE QVIASLKDRL KERIDEAMQH VVPGTVCEKM VAAVKATLYD AKDVHGLQET  360
LAQLPEHLVN EMCKNIFQVC KEFWPEMRAR CSQQVGGSNS CHMTGTA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002951404.1	0.0	hypothetical protein VOLCADRAFT_91849
TrEMBL	D8TY43	0.0	D8TY43_VOLCA; Uncharacterized protein
STRING	XP_002951404.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10095	3	3

Link Out ? help Back to Top
Phytozome	Vocar.0021s0170.1.p