PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0019s0023.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 2626aa    MW: 265901 Da    PI: 7.1203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0019s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-0623092330426
                           ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                           ++C+ff+  G+C+ G+rC+F H 
  Vocar.0019s0023.1.p 2309 RICHFFLS-GYCQKGERCRFLHH 2330
                           78996666.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5008811.247205237IPR002110Ankyrin repeat
SMARTSM002480.0022205234IPR002110Ankyrin repeat
PfamPF000233.0E-4205236IPR002110Ankyrin repeat
PROSITE profilePS5029711.877205245IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-6205249IPR020683Ankyrin repeat-containing domain
CDDcd002042.88E-5205243No hitNo description
Gene3DG3DSA:1.25.40.201.7E-6205242IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5010315.65723052332IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-423052331IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-423082330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-523082330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-423092330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2626 aa     Download sequence    Send to blast
MGLSNGKMEQ PSGTASQDGT YGSRRARQQK MESRLTAHMD SEDRRVKELT EGILYDFLPS  60
ALNVMLPRCE DHLQELDTDR CRAVASAALA VSALMNAPAG FLEFLLCVPW RKLSQLYPKT  120
PNLAARSDSI DKLVSNLQVT DEERRKLANT RIDPALMGTV LDFLYKDKHA DSVPPMLQLT  180
PVNPLQPDDK SAPLVVRETV AAVLDGATPL HCAALRGNPA QVDHLLYCGA DPTLKTAAGE  240
LPIELVPVCG DRATGSGCSG AAAAAVAANA VVEGSTSPPL SSSSSSQRNC RCMGPHDQEV  300
WECRSRLARS LIARRCFFSF GVGLFSWLRL VVFCLLCLLG QAGCYTSINR PVVERHIDTR  360
RQQKVAAARA RAHALVTRMR AEAEAGLHHL EQAKRECMES AAFHRGPPDI SQMCFTDPNK  420
SSPPPPPPIS QIHDINLHLQ ESGTSSTGEE LASEKAFKCF VRSVHALQSL DLHGDVVPQV  480
FAELVAAGSA ESRETHVLED EQAELYSCWA ESVLLKFRGC TCPGCAALAV QAVRMAHIQA  540
TRLFGKVDRV KQSHTERWRA VGQALARVVY VHICLLLETE AQASPTRSLV WRAEQCLREW  600
DRLEKAELTQ GAGVLDPRHV AALQLWAKTA DSDLYLAEAL HGQSMPPTKT LQEVVQGAVI  660
YGADNTPILA RPVSADVVAS LEQALTLSSL PSPMLANIVR GVVANAVAEL AAAARLREFV  720
GTRGAAALGG AGSGTSETVA ALTEALRAAE PFRSRLGPEM DAAQELHGRW TQRAQALEKL  780
ESAVEEVRAY ITAHPLSFSL AGAAAAAAAL AASTSAAAAA EAGAGGPATR AAPWPGPGLP  840
TVTATASSSG PESAAGKPGG SGHGATSREV GSGGSGGGES SSTGASSSGS GGATGTAAAA  900
CGEGTLAADL AEWDRRMRQL EAAMNDAKDA NISVTKAKRL VKEMTTVAAA AEASRQLEAV  960
MARRPSGPMQ LKLALNKAEA AASTLGSLGG APLPGLADVL GPLVAAARRR LDTERAAEAL  1020
SKAAASYRTL ADLARLEAAI YNAKKIGAEE LDPESYRTSL ELRAHLQEAA RMRTTLETAL  1080
RNLQNQLRPE DAEVLERALQ DAARWEDLLA PDLARARKAL EHWRAMTVSD AKLARLLREG  1140
ASTGVLARAI QEAAASGVKV QQAKRVLKLM QALETVLAGG GIDGGAAERY AAVKAKLEAA  1200
ELGGVTAGPL PDAARRMLAR LAAQIAREAL EAALKPHSDW SMAQRISVLR DALEKAEGVL  1260
AAAANEQQQQ QQEEGSDGKA SSDATAAAAT AIATAVAVGV TGTQQEQHQT APKLSNASAT  1320
GKTSRGKRCS GSSVTVGGSG SDGSGGDAPA LTGTDDAAGA SEPPTPSTLA SSSGSISSSS  1380
SSSSSTSSGS NCCGGGSSGG GGSADDEVLG AVRELVRKAR RVLEEDQAEM ARIERERQEA  1440
DRAKKEAQER QRQERQRQEQ ERQKREKAEA AERERLQAEK RERVRAERAR QLHQNQQHQS  1500
QHQHKAKAPA ATAAAAAASD PGSLGGPEKG GKASAPGRAA SGKGASTHHH QGSGPNGGGG  1560
NARSGSASIT VSAVAMAAGK AGSALREPQV LPQLAASAVM AAARHQPSAQ CQQQHQQHQQ  1620
QQHQHQQQQQ VSAVTTAAQS SAAASAVEAV PAGDQVATSA ASAAVSSESF DPPPTTVFVD  1680
PPQSAAIADP GTALGIFAVQ LLSANDAALQ SLTHQAAATN NVVDGAIVPA CLPPNAVAAV  1740
HTRGDSMGSL SEVVRNLNLD VIEALDMDHD VSLSCAYSPL DAGAVEATVA VACGGCGDSG  1800
TPADGGGSGG GSVTRTMSGV TAAAESVLDR TPSQRTSSVM SSVASADDDM LHSAAGAARA  1860
CSVAEVGGGG GGGCALGSLS SISSGQPGAS NASLEVSSLT SLSATANSAT AGPDGTAACR  1920
VAAAGAAGPV AGGPLGGGAG ASNSSNGNGG GAAAKPRFGL VDLGGASWGL DPNPVLTGVS  1980
VRTASLFGSL QPSMGSSMGE FGSMLCAPKP DAGGGGWAAA PLGAAVGAML YNGQAAVQGL  2040
PVGGPDDAGN MLGSAATVRH VLGGSGGGNG MHVRMTDASF SSLVPVHASP RTTVATASTS  2100
VDGILQVRPL GAGGMPGNAP PLLQLAPTVA AAAGSGGSSG SGRSSLHLAM PLQQPQVSNG  2160
AGLAPRSGYW TPPSCQAPID IPSDGAAAAA TAAAAASACN GGAPSSGTIS SLQVGGGVGL  2220
HHLSLGTSPV GSSFQMLDWS LSQQHQKLQP QLPSPPPPHQ HLDGGLQLVH LGGGGGGGGG  2280
PPTAGGSGGG GSGVQVLRSA GGTGATGSRI CHFFLSGYCQ KGERCRFLHH IPAPAAGSPL  2340
PSAHVAISGG SSTVLQLGQG SPPPPQLSPH HLRGQVGCFG VSGGMGPPGG SGVGAGAGGG  2400
GGGNGSGAVG SFAFGVPGAE AFAPLGPGGG GRVSRASTGM DSGPSGQPAA VAVAEQQQQQ  2460
QQVLLLSSKR ASVNHLRHNG VAATGPPGGA GVMSGTPLGL ILMDRNQPGP VGGGLSGPGS  2520
SSSSGGGGGN GEVVLGSHQQ PVQLRDSATG ATFAAVLTVP GVPIGGGSFH AKQLQQQQQL  2580
QPTSARDHAA PQQQQQQQQP MLLTLPDDLS YSPRSSSSRS GPSSR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002950231.10.0hypothetical protein VOLCADRAFT_90642
TrEMBLD8TUY40.0D8TUY4_VOLCA; Uncharacterized protein
STRINGXP_002950231.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP816433