PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0018s0197.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 2514aa    MW: 248069 Da    PI: 5.1719
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0018s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP83.13.6e-26125202176
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-..------S- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak..hnerrrkk 76 
                          +Cqv gC ++l+ +k y+ rh+vCe hskapv l+ ++  r CqqCs+fh++s f+ +kr+Cr +L++   n+r r++
  Vocar.0018s0197.1.p 125 ICQVAGCGVNLEGMKGYFLRHRVCEEHSKAPVLLIGDIPSRLCQQCSKFHHVSAFEGSKRTCRVQLDRirINKRIRRN 202
                          5*****************************************************************963258887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-26120187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.674123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-24124198IPR004333Transcription factor, SBP-box
PfamPF031105.4E-24126198IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2514 aa     Download sequence    Send to blast
MAREADLELW DIDIDQSSVP GHPEAWTLAG YTWDPVGLVA TRKSVTVENR GVYASSIQQL  60
NNNIDINNSN SNPSGDNDSG GGSNQDLEPG MEVDPRDGGL CPLDPELLSS APVYQPQPAG  120
SKMMICQVAG CGVNLEGMKG YFLRHRVCEE HSKAPVLLIG DIPSRLCQQC SKFHHVSAFE  180
GSKRTCRVQL DRIRINKRIR RNRKLNAAAS TALAAAAGFQ DEGDGGTLGE LPARPASAFG  240
GGGGRAKRPA DSSGSGEGSW IYSRKSSRHG GTGGGAVRGA RGGAACDVVG SGAGDALAAS  300
AATAAATIAG IAATATFNEP EPLPESGASD TGSREHPRAS LGLSGLMRWP GTLSSAPPPP  360
RSPPSAVVAG VASEAMGHVV AGGFGEGGSG SGAALAHSPA SAVTGGSGSA GAGVDNSTGM  420
QNSGFSNNHF QQPQQQQNHP HQSGNRVTRL DSLPVSGADV GGPGSIAAAA AAAGLVNEGS  480
LTAPLGDHAV PSGLDLASLV RQQDSAAAAA QVLPGQHLAA GSPVDGTAAC VGVPQAAGQA  540
VRLNDRIAAA AGCLLRPLSG PDSGGSSSAA AQEITSLWST TAALLNRTEG AAAAVAAAAA  600
VGTVERQLSQ QRQPSLPESG SGGGSGPEML LSATSLHPLL QQQLQQELLL HQQKLQLQQQ  660
SMLQQPLLLE GSRPLLQGES ISIVNLTELA AQQQQQQQLN QASTRLCHQQ LQQQQALLIQ  720
QHQAASTGTL GQILLDVPMQ LPGCGDASLL ATTTAAAGGA GTARLAESQF VAAAVQLPLP  780
AQAAAISQLS GPSNVTGCSA PGARKAPGSA SHTGGGGDTD GGGRAAGTSI PSGGTNALSS  840
SKLVRMSLEN DDALDESGML LSNLMDLLQT QAAEPRDSAT AEPRIAWTAN NTGLTFSEPD  900
SCGRGNGSME MSAAGTAAAA AASNGFGGLA GAGGGGGRPV ALGDLSNAAA LSRASSGAVG  960
SPQEAAMLKA AAAGVASRLG SLEALGVGVP GAALAGCRGG TGLLAAAAAA AGLGTTTGAL  1020
TVPVPGALAA AAAASAAAGG GGGGVGGVPV LNGRMLDGLG SLSAAPGLSA QLQEQALRAP  1080
TNPLATTNDL LLQQQLLLAQ QQQQLQLLQQ QQLLRLQQAQ AHAQAQVPGV IMSGGAAAAA  1140
PSVPAAGLLL SRLLDADTKT HHLSTELNGC LVEKQLLRRQ LLATLSTCQG TDVEQLTVAG  1200
TSAANVGSPA AAAVASVGAI SVPGAAQLAL QRPLLGGLAN AAAAAGGLGA GLGLGGGAGA  1260
GLASSGLGGF PGLGPAGLVD TTGGGVMGLG ATGLRPGVLA AAGLDMHALH MGAGGGVVGG  1320
GAASLGNLAT GGAQGPLGLG SAGSGLLGAG RPSAALQLQA LAETRAAAVA AAAAGASTVV  1380
PPQGVTGAFG AGGPVVLPGA GGAAGGAAAA AGSSSGGTAA ASAAAGYSGP DLLTRVSLKI  1440
MNCLPDELPS DIRGRMQAFA SQAPLDLVQG CLRPGCTEVV LDALHCGDEA RMVSELLRNG  1500
NADAAAAALL AALPPALHSK EIYLQAADKA LCLRPGAPPR HTSWAGMGIR RGGLRVSKPV  1560
LAGAETLVVH LNGADMEPCV RVRVYGKHLA DPGVTFLARL AGLALEVNIK PVGGDVPVAA  1620
AAAGSVTATT TTTSQSRDNA TSLTCAPQPR KAAANAAAPA IATTAAVGSA ISMFAAPTTP  1680
SPSPSPPLPA ATAASDAASD GDAAGRCCSM GLLYDAFDVE VRFPYYAPPQ GLLILETRAG  1740
VLLGDWAAVL LLEDAATAAE VEGVLRDMEP DQARRLAASL GMFVDHAERC ATVLEARERE  1800
RNEQARRRDT QERHYHADME GEEEEPQQEE DYHCHYHHYE DDGDVEVDED GEEMEDGAAS  1860
RADVQSVAAG FGSVCVCAEV FGAAHGRVVR MGHTLLAYSA LRGSARLMSY LGSQLVEMGE  1920
PLSALPTASY KGIDLLACAV LSGCGPVISI AAAWAARSGT AVSWRAQVPG QPAGVNLLHL  1980
AASLPLSLAV HTLDTLWALA TSAKQTPAAA GGEAFASAWF ADAGAETAFD APSLLFRVAI  2040
SSAVSAAAAA AYGTAAAVPP SACSAAAVLT SVLAADNLDR LCLMRLASSY IRMHNYTSPL  2100
DNVDLPSLEA NSCAGLSGVV NPAPSLRQLD AGGDAGADAV QDLDLGAAAS AAALRSSPIR  2160
LACRTADNTL LAAPPSRADN ADRSGHGSVG GPPTSGSYEP LAALIASCGQ AAAGLQGAAA  2220
TGDALAAGGP PQSPPAAVAA SPPRIRVSVA PKALAQTAAA AAAAVASSRQ HGTLGSSSWL  2280
DGGGSGADAS CAPPSGTTNA TTTLFASGSL PAFASGMTAA GMGPYASSMA SYFSQVAAAA  2340
AAGKPTLPLE PLVDMFRPLP ESPSSGQDNN SGTAGGGGGA AAASGPLPPA CGSQAGGNDA  2400
TATTAIAMAI ATDTAAAFGM LGDVRGSGFG VTAVPRSSSA AAPGHLEALF REQEEEEEES  2460
GDPQQLPSEV SAAAAAAAEP GSERLRGHMR GLARMFKRLF KKGSGSEGVG APE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1256722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-18squamosa promoter binding protein-like 9