PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0018s0169.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | NF-YC | ||||||||
Protein Properties | Length: 501aa MW: 49640 Da PI: 9.9482 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.7 | 1.4e-14 | 8 | 83 | 22 | 96 |
NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 Pl +rikk++++d+dv +is +P+l+ +a elf+ +l ++ a++ + +tl s ++aav+ ++ dfl + v Vocar.0018s0169.1.p 8 PLaTRIKKMMQTDDDVGKISQATPILIGRAMELFLEKLCRQAISIAQSRQAKTLTPSHLKAAVKADTTLDFLAELV 83 6636********************************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.36E-18 | 11 | 87 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.2E-24 | 11 | 83 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-16 | 11 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MKTRKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEL FLEKLCRQAI SIAQSRQAKT 60 LTPSHLKAAV KADTTLDFLA ELVAPAPDLP AVEAENGEPA PKPNKRRRTN DSADGLTSPE 120 GGRGRGRSGG GGGATTSGQA NDETSPGPPS RGRGSKPPVP PGSQGPSSRG TKKESTGRRG 180 SKGKAAAAAA AAAAAAEAPE GGSSDAAEPT GSASPPPPPT VQAPSSEAPV PGLPAFAPSV 240 QPPKRQEPPI KQEASTKPEP AAGPPPAASS GGPSGGTPGT SIVASLRAQQ PFFGLGRKGK 300 NLGGSKSSVG APSPSSAQGQ QAQRVQTQHT SPQPMLEAPA SSKATVAAPS TDEGQWTQQA 360 QPGIFPLRLQ PLDSSAHAAS AAAGLALPDA ASARQSGANG VRGPENVGAQ QAAFGQGRDG 420 SGMGAEVGGG QDAGFGQGQL SIVGSCGGQL AAGPSLVGGA AQGGRAGTGL GSLMAPLGAS 480 FAYFQAPQQQ GDMDDDYDNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-18 | 12 | 73 | 16 | 77 | Transcription Regulator NC2 alpha chain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 106 | PKPNKRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 3e-23 | NF-YC family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0018s0169.1.p |