PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0017s0204.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB

Protein Properties

Length: 1311aa MW: 133179 Da PI: 7.0481

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0017s0204.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.7e-17	71	113	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eEde+l +v+ +G + W+ Ia+ ++ gRt+k+c++rw + Vocar.0017s0204.2.p 71 AWTKEEDEQLRSLVETHGANKWTEIAAGLP-GRTGKSCRLRWVN 113 7***************************.*********88 PP
2	Myb_DNA-binding	51	3.4e-16	123	166	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ Ed+++v+ + +G++ W++Iar+++ gRt++++k+rw++yl Vocar.0017s0204.2.p 123 AFTPAEDQKIVEMQATYGNK-WSAIARELP-GRTDNMVKNRWNSYL 166 79****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.289	64	115	IPR017930	Myb domain
SuperFamily	SSF46689	1.69E-28	67	162	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-15	68	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-23	71	122	IPR009057	Homeodomain-like
CDD	cd00167	2.59E-15	71	113	No hit	No description
Pfam	PF00249	8.4E-16	71	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	23.293	116	170	IPR017930	Myb domain
SMART	SM00717	5.9E-15	120	168	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	122	166	IPR001005	SANT/Myb domain
CDD	cd00167	2.82E-12	123	166	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-21	123	169	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1311 aa Download sequence Send to blast
MEKWRQDGGD CESASMSTTD TDDSSGCEEV PEHEVTSTRR GASGARATSG SHGTAGSASL 60 GDPLNRTPYR AWTKEEDEQL RSLVETHGAN KWTEIAAGLP GRTGKSCRLR WVNQLRGDLL 120 TSAFTPAEDQ KIVEMQATYG NKWSAIAREL PGRTDNMVKN RWNSYLKRRV EMGRAIALSL 180 GLGLVPAPGA EATSAEAASQ HPQLQQPQQQ QQMTVLPSPR RRRSGDGWAT ATSEGRERQR 240 RSMEHSGGAV TGSGATTSSV GGGGGGRSGG PGRRSSSRGR GAGSRGAACS ASASSQQQQV 300 PPATSAAMPA SCGPGAPPAA LLPGHVTSGL QTASSAPAGT IPAAPPSFVL PLPAGHTGAT 360 AATHHVPVWH HAGATGTVSV FLDQQHHPLQ STGGAPTLAT SSFTSAGGTV PAAASHIAPP 420 LLPSGMMPSP AFPASHNVAA SSSSSSSAPP TAALSTFGLG GVAASGLTVQ AAASGVPGIT 480 VGVLGGSTAG ACGGGFMTTG AGLPMIPHVG GGACFMQGQA LHPQAHPLQQ QPAMQGIQWL 540 QPPQQQQMQL PLQQQQPQPQ VLHGAVPGYT VLPSLHPQQQ PQQQQGQQLM VPPPQQQQHL 600 VAAAAPMVAA AAGSPDRDST NAQRVALLQQ YFMKHLPAEQ AAIAAAAALN LFHQTAAVEA 660 QRAAAASAAS QQSQPPLPQQ PQVQQQSVPA TMRTSNSDGL PQIPELPWTA SAPSGSRQLS 720 AAATTATDAG YPSMASAASA AAACSFFLGG PMYGTLSMPS VIPISNPNAA EAFPAVAAAN 780 NTACGASPPK RIRMRRDDTG VSTVAASFPD PRAPPFDLQQ SHQRTGTTVA AQHRPQDLPQ 840 PQRSDEPMRG SDGPGARRSL DGAPSASQSS SESSGRLPRQ VLAAPLQHQE AGMAHTVPAV 900 EAVAAPAGPV PSTSSGGLGH HARMRDGLQL TELLMASPIC DPLPPPQQPQ DMFILGGSSP 960 EGSPPKCGGG ALSKRIVASA PALAAGAAAA VVAAPSSGEH SVEALMAMDL GFAAAAVGSG 1020 SRNATASEQR LQFPVGDETQ PAVQAASHDE LTPSRAQQGT GGDAFGISPV GTGTASGGDG 1080 MLWEAAVQRG CLLHGAAAAS CGRREDMKPV ASGAAAFPAA HDIHCPTTGL ATAAKGTTVR 1140 PSQPGHHYHH HHPTQGHHHQ RAHLMTQHQQ QSGRPYDGHD DSSTPHRNRD AEDFLSHALC 1200 GFLVDNPMGI PTPVDMSPLT GSMSDLAAAA GDDNDGEAHG VVDSLPSDWH LDGIMDKAHL 1260 PWSTVDLAAH PGSSPPDLSL SGGNTVAAAG GLQAKGSSGG NGGGIGSFVA *

Sequence ? help Back to Top

Protein Sequence Length: 1311 aa Download sequence Send to blast

MEKWRQDGGD CESASMSTTD TDDSSGCEEV PEHEVTSTRR GASGARATSG SHGTAGSASL  60
GDPLNRTPYR AWTKEEDEQL RSLVETHGAN KWTEIAAGLP GRTGKSCRLR WVNQLRGDLL  120
TSAFTPAEDQ KIVEMQATYG NKWSAIAREL PGRTDNMVKN RWNSYLKRRV EMGRAIALSL  180
GLGLVPAPGA EATSAEAASQ HPQLQQPQQQ QQMTVLPSPR RRRSGDGWAT ATSEGRERQR  240
RSMEHSGGAV TGSGATTSSV GGGGGGRSGG PGRRSSSRGR GAGSRGAACS ASASSQQQQV  300
PPATSAAMPA SCGPGAPPAA LLPGHVTSGL QTASSAPAGT IPAAPPSFVL PLPAGHTGAT  360
AATHHVPVWH HAGATGTVSV FLDQQHHPLQ STGGAPTLAT SSFTSAGGTV PAAASHIAPP  420
LLPSGMMPSP AFPASHNVAA SSSSSSSAPP TAALSTFGLG GVAASGLTVQ AAASGVPGIT  480
VGVLGGSTAG ACGGGFMTTG AGLPMIPHVG GGACFMQGQA LHPQAHPLQQ QPAMQGIQWL  540
QPPQQQQMQL PLQQQQPQPQ VLHGAVPGYT VLPSLHPQQQ PQQQQGQQLM VPPPQQQQHL  600
VAAAAPMVAA AAGSPDRDST NAQRVALLQQ YFMKHLPAEQ AAIAAAAALN LFHQTAAVEA  660
QRAAAASAAS QQSQPPLPQQ PQVQQQSVPA TMRTSNSDGL PQIPELPWTA SAPSGSRQLS  720
AAATTATDAG YPSMASAASA AAACSFFLGG PMYGTLSMPS VIPISNPNAA EAFPAVAAAN  780
NTACGASPPK RIRMRRDDTG VSTVAASFPD PRAPPFDLQQ SHQRTGTTVA AQHRPQDLPQ  840
PQRSDEPMRG SDGPGARRSL DGAPSASQSS SESSGRLPRQ VLAAPLQHQE AGMAHTVPAV  900
EAVAAPAGPV PSTSSGGLGH HARMRDGLQL TELLMASPIC DPLPPPQQPQ DMFILGGSSP  960
EGSPPKCGGG ALSKRIVASA PALAAGAAAA VVAAPSSGEH SVEALMAMDL GFAAAAVGSG  1020
SRNATASEQR LQFPVGDETQ PAVQAASHDE LTPSRAQQGT GGDAFGISPV GTGTASGGDG  1080
MLWEAAVQRG CLLHGAAAAS CGRREDMKPV ASGAAAFPAA HDIHCPTTGL ATAAKGTTVR  1140
PSQPGHHYHH HHPTQGHHHQ RAHLMTQHQQ QSGRPYDGHD DSSTPHRNRD AEDFLSHALC  1200
GFLVDNPMGI PTPVDMSPLT GSMSDLAAAA GDDNDGEAHG VVDSLPSDWH LDGIMDKAHL  1260
PWSTVDLAAH PGSSPPDLSL SGGNTVAAAG GLQAKGSSGG NGGGIGSFVA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-29	72	171	10	109	B-MYB

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	242	GRERQRRSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-34	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Vocar.0017s0204.2.p