PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0017s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 1405aa MW: 149207 Da PI: 7.9589 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1.1e-11 | 1138 | 1189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ ++++grW+A+I++ + + ++++lg + + Aa+a++ a +k +g Vocar.0017s0120.1.p 1138 SRFRGVTKHRRSGRWEAHIWV----KeIGRQVYLGGYEEEVHAAEAYDVAVLKCKG 1189 789******************....4345**********88*********998765 PP | |||||||
2 | AP2 | 27 | 1.1e-08 | 1276 | 1325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ + +grW+A+I p g +k+++lg f ++ +Aa+ +++ +l+g Vocar.0017s0120.1.p 1276 STYRGVTAHL-SGRWEARIGIP---G-SKHIYLGLFESERDAAASYDRSLVRLRG 1325 569****999.7*********8...3.6**********99********9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-11 | 1138 | 1200 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.85E-18 | 1138 | 1200 | No hit | No description |
Pfam | PF00847 | 1.9E-6 | 1138 | 1188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-24 | 1139 | 1204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.529 | 1139 | 1198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-14 | 1139 | 1199 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-15 | 1276 | 1335 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-13 | 1276 | 1335 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-20 | 1277 | 1339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.435 | 1277 | 1333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-14 | 1277 | 1334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 1278 | 1289 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 1315 | 1335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1405 aa Download sequence Send to blast |
MSEVRPSGSI QFCNLPEGAV QGVSSMEPLA ELTPEHHDSA LVAAAAVGVG VGVATVAVVP 60 PRQPQRSMRA LDGLALSASH GYRALDDDCD GERAAIQGYS SLRHVVQFNT DADTAPFNAA 120 FTAKAPNASA APAAPPAAAA AGEPPASVTA DVPSSREAPP PPPPPPLPPP PPASQVAGED 180 IGNLTDRIRR RSRQLHCSAV HITPYKCHTD VTATATITIH GDQSRQAPVI PSPGTSLDFG 240 NQEPLPPPPP PPPPPPPPPP SGPGGSGGLP GGRTCPTTQV NQHSVLDLGY NHQSNHNQYN 300 RYDQSQLHLH QPPNDVVSYG ANGLTDGDCT PGTDCATTPA TRGHAAVERL ESAGSAVTFG 360 AGIDEAGKAA ARRRPISDGG GGGGGGGYGG GGNDGCGGRR GRSVQASSPS TGVVLDSHLR 420 QPYTVQYHHL HQSHLLPPGN DRGTAPWGPP GYGPPAAAQP GQPANGAGAT AAGGTSTQLP 480 PQELMNRQHV TAPQLPQPPL SRETYGTAYH PRSFGNPFRA RGSSGPVAVA VVADDELTDH 540 GPQGHTTTGS GSLLGERENL YGNINMVPLQ AAGQTKYSDA VQSVGTAVQH YPIEELPSSP 600 QQQHYYRHHQ HQPLQQQRHH HHDHHNQPWL QRNHLHPPTQ QPRSNLQRQD YHRRPLHQQQ 660 QFQQQQQQQQ HQGPSPGAMA GGSSHLTTAT ATAAQSHGQY PAAQSSERRR MYEQQRQQQQ 720 QQQQQQQQQQ QLQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ RQQRQQRQHN PPHYHPHQYH 780 HHLQNTAFQT SADIPSSGAD TAGRFGMYDS VHGQGLGFPQ PAVESQQQPS TPAAAASRYA 840 DLADPIEGHS AGGLRAERRA LSSLDWRGPL SAALQDSGGG FPGGDQGGVM YGNSMDVYGL 900 TPAQPNEDTD DVLLTYLHHG GSTGAAAAAA FGEARLLYPP TAPDNPSATA ADSAPMRSAS 960 APATVSSSQN LTFAFGMGDG NRRTAAWVGE EVQGQAAAAL AAGGNVQPTH DFGGAGPVIE 1020 AAGRISTKGQ GKPRRGAAVA EVVATPLPAA PHAPPLPAIL LGPQGAAGAG AAGTSSRAPK 1080 RSAAMAALAR FHSSRQGRSS SGDSRSVAAA AEDSHGGGDA DGQQEGGGEE GNGKRRSSRF 1140 RGVTKHRRSG RWEAHIWVKE IGRQVYLGGY EEEVHAAEAY DVAVLKCKGT KGVRTNFPIS 1200 QYQGLLPSLK DIELEDLIMA VRRQMCFLVK PPRNKGAKPA GSLYFIILCR TDRCRTMMHS 1260 IGHIAMWMQG FSRGSSTYRG VTAHLSGRWE ARIGIPGSKH IYLGLFESER DAAASYDRSL 1320 VRLRGSSAAT NFPLSEYRRE LAEYHSYQQA VLLQDQRMAS LMKPGPDYEK WVKAGFSAFP 1380 HIQMEQAAAA GEEAAARDLE LKRS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002953244.1 | 0.0 | pathogenesis-related genes transcriptional activator | ||||
TrEMBL | D8U3L9 | 0.0 | D8U3L9_VOLCA; Pathogenesis-related genes transcriptional activator | ||||
STRING | XP_002953244.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-35 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0017s0120.1.p |