PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0015s0365.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 1004aa MW: 103274 Da PI: 7.126

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0015s0365.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.3	1.7e-24	538	587	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++++edl+++F l +k+AA++Lg+c+T+LKr+CR++GIkRWP+R+i++l Vocar.0015s0365.2.p 538 KRLRFEDLQAQFGLGLKEAANNLGICATTLKRACRRNGIKRWPRRQIAKL 587 899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.892	522	607	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-19	540	587	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MAHSSLGLLA GGSDLKQRLS KALLDVSGTL ASVKSGALVQ VWMPEHTHDG TIVLSCQGLP 60 FAVAGVGDLL ALFRCVSVRY RFSTDVMKPT LMGAIGRVYS TLEPEMSHNV QKYDKQVYLR 120 VSEAQRCRVH STLMVPVFGS DSRDTPLAVF ELVQGDKDVT FPAVLSHLTA SLQNVHLFTT 180 DLETAAIAAG LRKWPMHIDM MPSAEHDSAG VGRLSPSRDE PRLMSNFQNM QAGAEEKEQA 240 ASSNVVSTEE KQSPNASKGD EAGSRACEWT SQSGAARLSV GNPIGQTCPA GQAPSSGLMA 300 TSGSGASRLM AGPAPAAPAT MGPTLGICSN SGAAVGKPEA VAAQGFEVST ADGVGARRQS 360 GTGPMEASNA QQFMSWLAQQ NATGNNALGQ LRTLLEQQQQ RSKAEQSGGN LLGQQTASGT 420 QPQSMDALAA SMGASLGMVP PNMAASPTKG SVMQQHAAFD MAAATAATTA AATTTTTSDK 480 QGNKLTRSGS VQRTLGAAAD ADDGDGEDIS SGGEDDDSDD ERPGGHRNNN RVGGGAGKRL 540 RFEDLQAQFG LGLKEAANNL GICATTLKRA CRRNGIKRWP RRQIAKLSKA LNQMGYNGAP 600 PPGLVQNAVV SAGASSGQAA VKPKPAKKPD AAALQQATQL LFQHQLGAAA AAAAAAGGGG 660 MFTNLSTAGM VVGGQLQGIP QGLHGMYGVA GQPAQQQHQP PPQQAGMFSG PFMGPMGAIM 720 AQHGGNVPSG VLGQGPQALL GAMGGIGGGL GAAIQMPVMG SLGGLQGSAM GPMQTAALGL 780 QLQGAGGLQL QGAGSTGMPV HGHTGMLHPL LAGGSFNMHQ ALQQQQQFQQ QLQAAHHQQQ 840 QQQQTSSLLQ QQHAVLQQQM QIQQQVQQQQ QQQQQQQQQL GPVALQQMGK PDAVSWLVQA 900 QAQAAPQASL AANGMTTASS AMDISAPRIS CGEAHSPFSA LGMSPAMSGG NTELCGLAEI 960 PEDFIQNLNS GGVSQFGQLL KSGTLGVGTM ELMDLLGDDI AAR*

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MAHSSLGLLA GGSDLKQRLS KALLDVSGTL ASVKSGALVQ VWMPEHTHDG TIVLSCQGLP  60
FAVAGVGDLL ALFRCVSVRY RFSTDVMKPT LMGAIGRVYS TLEPEMSHNV QKYDKQVYLR  120
VSEAQRCRVH STLMVPVFGS DSRDTPLAVF ELVQGDKDVT FPAVLSHLTA SLQNVHLFTT  180
DLETAAIAAG LRKWPMHIDM MPSAEHDSAG VGRLSPSRDE PRLMSNFQNM QAGAEEKEQA  240
ASSNVVSTEE KQSPNASKGD EAGSRACEWT SQSGAARLSV GNPIGQTCPA GQAPSSGLMA  300
TSGSGASRLM AGPAPAAPAT MGPTLGICSN SGAAVGKPEA VAAQGFEVST ADGVGARRQS  360
GTGPMEASNA QQFMSWLAQQ NATGNNALGQ LRTLLEQQQQ RSKAEQSGGN LLGQQTASGT  420
QPQSMDALAA SMGASLGMVP PNMAASPTKG SVMQQHAAFD MAAATAATTA AATTTTTSDK  480
QGNKLTRSGS VQRTLGAAAD ADDGDGEDIS SGGEDDDSDD ERPGGHRNNN RVGGGAGKRL  540
RFEDLQAQFG LGLKEAANNL GICATTLKRA CRRNGIKRWP RRQIAKLSKA LNQMGYNGAP  600
PPGLVQNAVV SAGASSGQAA VKPKPAKKPD AAALQQATQL LFQHQLGAAA AAAAAAGGGG  660
MFTNLSTAGM VVGGQLQGIP QGLHGMYGVA GQPAQQQHQP PPQQAGMFSG PFMGPMGAIM  720
AQHGGNVPSG VLGQGPQALL GAMGGIGGGL GAAIQMPVMG SLGGLQGSAM GPMQTAALGL  780
QLQGAGGLQL QGAGSTGMPV HGHTGMLHPL LAGGSFNMHQ ALQQQQQFQQ QLQAAHHQQQ  840
QQQQTSSLLQ QQHAVLQQQM QIQQQVQQQQ QQQQQQQQQL GPVALQQMGK PDAVSWLVQA  900
QAQAAPQASL AANGMTTASS AMDISAPRIS CGEAHSPFSA LGMSPAMSGG NTELCGLAEI  960
PEDFIQNLNS GGVSQFGQLL KSGTLGVGTM ELMDLLGDDI AAR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946865.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8TKM7	0.0	D8TKM7_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002946865.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	5e-14	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Vocar.0015s0365.2.p