PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0015s0365.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 1005aa MW: 103345 Da PI: 7.126

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0015s0365.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.3	1.7e-24	539	588	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++++edl+++F l +k+AA++Lg+c+T+LKr+CR++GIkRWP+R+i++l Vocar.0015s0365.1.p 539 KRLRFEDLQAQFGLGLKEAANNLGICATTLKRACRRNGIKRWPRRQIAKL 588 899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.892	523	608	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-19	541	588	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MAHSSLGLLA GGSDLKQRLS KALLDVSGTL ASVKSGALVQ VWMPEHTHDG TIVLSCQGLP 60 FAVAGVGDLL ALFRCVSVRY RFSTDVMKPT LMGAIGRVYS TLEPEMSHNV QKYDKQVYLR 120 VSEAQRCRVH STLMVPVFGS DSRDTPLAVF ELVQGDKDVT FPAVLSHLTA SLQNVHLFTT 180 DLETAAIAAG LRKWPMHIDM MPSAEHDSAG VGRLSPSRDE PRLMSNFQNM QAGAEEKEQA 240 ASSNVVSTAE EKQSPNASKG DEAGSRACEW TSQSGAARLS VGNPIGQTCP AGQAPSSGLM 300 ATSGSGASRL MAGPAPAAPA TMGPTLGICS NSGAAVGKPE AVAAQGFEVS TADGVGARRQ 360 SGTGPMEASN AQQFMSWLAQ QNATGNNALG QLRTLLEQQQ QRSKAEQSGG NLLGQQTASG 420 TQPQSMDALA ASMGASLGMV PPNMAASPTK GSVMQQHAAF DMAAATAATT AAATTTTTSD 480 KQGNKLTRSG SVQRTLGAAA DADDGDGEDI SSGGEDDDSD DERPGGHRNN NRVGGGAGKR 540 LRFEDLQAQF GLGLKEAANN LGICATTLKR ACRRNGIKRW PRRQIAKLSK ALNQMGYNGA 600 PPPGLVQNAV VSAGASSGQA AVKPKPAKKP DAAALQQATQ LLFQHQLGAA AAAAAAAGGG 660 GMFTNLSTAG MVVGGQLQGI PQGLHGMYGV AGQPAQQQHQ PPPQQAGMFS GPFMGPMGAI 720 MAQHGGNVPS GVLGQGPQAL LGAMGGIGGG LGAAIQMPVM GSLGGLQGSA MGPMQTAALG 780 LQLQGAGGLQ LQGAGSTGMP VHGHTGMLHP LLAGGSFNMH QALQQQQQFQ QQLQAAHHQQ 840 QQQQQTSSLL QQQHAVLQQQ MQIQQQVQQQ QQQQQQQQQQ LGPVALQQMG KPDAVSWLVQ 900 AQAQAAPQAS LAANGMTTAS SAMDISAPRI SCGEAHSPFS ALGMSPAMSG GNTELCGLAE 960 IPEDFIQNLN SGGVSQFGQL LKSGTLGVGT MELMDLLGDD IAAR*

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MAHSSLGLLA GGSDLKQRLS KALLDVSGTL ASVKSGALVQ VWMPEHTHDG TIVLSCQGLP  60
FAVAGVGDLL ALFRCVSVRY RFSTDVMKPT LMGAIGRVYS TLEPEMSHNV QKYDKQVYLR  120
VSEAQRCRVH STLMVPVFGS DSRDTPLAVF ELVQGDKDVT FPAVLSHLTA SLQNVHLFTT  180
DLETAAIAAG LRKWPMHIDM MPSAEHDSAG VGRLSPSRDE PRLMSNFQNM QAGAEEKEQA  240
ASSNVVSTAE EKQSPNASKG DEAGSRACEW TSQSGAARLS VGNPIGQTCP AGQAPSSGLM  300
ATSGSGASRL MAGPAPAAPA TMGPTLGICS NSGAAVGKPE AVAAQGFEVS TADGVGARRQ  360
SGTGPMEASN AQQFMSWLAQ QNATGNNALG QLRTLLEQQQ QRSKAEQSGG NLLGQQTASG  420
TQPQSMDALA ASMGASLGMV PPNMAASPTK GSVMQQHAAF DMAAATAATT AAATTTTTSD  480
KQGNKLTRSG SVQRTLGAAA DADDGDGEDI SSGGEDDDSD DERPGGHRNN NRVGGGAGKR  540
LRFEDLQAQF GLGLKEAANN LGICATTLKR ACRRNGIKRW PRRQIAKLSK ALNQMGYNGA  600
PPPGLVQNAV VSAGASSGQA AVKPKPAKKP DAAALQQATQ LLFQHQLGAA AAAAAAAGGG  660
GMFTNLSTAG MVVGGQLQGI PQGLHGMYGV AGQPAQQQHQ PPPQQAGMFS GPFMGPMGAI  720
MAQHGGNVPS GVLGQGPQAL LGAMGGIGGG LGAAIQMPVM GSLGGLQGSA MGPMQTAALG  780
LQLQGAGGLQ LQGAGSTGMP VHGHTGMLHP LLAGGSFNMH QALQQQQQFQ QQLQAAHHQQ  840
QQQQQTSSLL QQQHAVLQQQ MQIQQQVQQQ QQQQQQQQQQ LGPVALQQMG KPDAVSWLVQ  900
AQAQAAPQAS LAANGMTTAS SAMDISAPRI SCGEAHSPFS ALGMSPAMSG GNTELCGLAE  960
IPEDFIQNLN SGGVSQFGQL LKSGTLGVGT MELMDLLGDD IAAR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946865.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8TKM7	0.0	D8TKM7_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002946865.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3760	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	5e-14	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Vocar.0015s0365.1.p