PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0015s0269.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

CO-like

Protein Properties

Length: 1356aa MW: 138372 Da PI: 6.4434

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0015s0269.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	5.9e-07	8	39	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 +C++++ k ++ fC++++ +lC++C + H+ Vocar.0015s0269.1.p 8 VVCDHCDAKLASVFCHSDGAFLCPQCDAQVHS 39 68**************************9993 PP
2	CCT	37.1	1.1e-13	898	924	18	44
CCT 18 eKkirYesRKavAesRpRvKGrFvkqa 44 Kk+rYe+RK++A++RpRv+GrF+k + Vocar.0015s0269.1.p 898 AKKVRYECRKQMADTRPRVRGRFAKVN 924 59**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	8.0E-8	5	52	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.751	5	52	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-5	7	50	IPR000315	B-box-type zinc finger
CDD	cd00021	1.24E-8	8	51	No hit	No description
PROSITE profile	PS51017	11.052	881	923	IPR010402	CCT domain
Pfam	PF06203	4.1E-11	884	923	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1356 aa Download sequence Send to blast
MDSSNFKVVC DHCDAKLASV FCHSDGAFLC PQCDAQVHSV NKLAQRHLRV PCQSCPVWAY 60 REAKSRGRLL DMPLAACLTK NLHLDVFDGA SACWPSKNAS SVAMGTPQSD ASSPQATTAA 120 PLVNAGSPNS EVHATAFHQP SNSWSQNSAL AMVTSQPQPM PQPSLGCLSM SQGMEPAEGA 180 RAAAALFSIS PFSACSGGSL QAAANAAVQR PPQPGPERCS VQGVQASTTT TTAAATAAPP 240 PPQQQQQHIS QAAQSQHSQH TLQRAASQEL MDAVDSMDVA MLLDTFGAPL DQLQDNSNKR 300 NGDAVQQQQQ QQQSQVLPQQ ESSAQQQQFM AATQQQQQIV AAELLQSQAS AMCMTSMPSA 360 AVAATGGAAA AAGAPATLGN TLNMSSVWAP LAHQAQVQQQ QQQQHTLFQQ QQQLLQEQLQ 420 QQQRQVQVNA AAIAAAAAGC LAQPSAFAVQ LSEPMAVPTQ QRQQITTARS LSGLSCLSQS 480 GLSSNNTDGQ QLGSARSSNT LLLQSLDQQM TGMATCGLPM MTVAGPMAPT SGGGGGAGVG 540 AAAAGWASIE ATQRQLQQLQ QQQQQTALQY LQQKQQQQQV AAALAAAQQQ QQQQKQAMQQ 600 LLQRAMTEDL PRTSPISIGT AAGGVTAFAS ARRDATVRGG LGLLDPGIGR GRSLAQSPMS 660 LLPVPGTAFA SSSCSLLDNL SGSGMNPSSI AAVAAAAAGR VAPGNPFGVG LLPGAAPGGP 720 TAAMAAAAAA APQPLPGARS LDAAAASSFG ALPTSVVGSG GSTSVSPSNC NTLAGAVAER 780 HVPLTAQQLA QQMVLPGSAP PALGLAASVT MGSCDLSESH LMRMSSDGFD GLIGAAATVT 840 GNSLGNSLGM LGLDSDAAGL LTLLERPDGT LKELDPERAA QLNRQKRMLR MRALAEGAKK 900 VRYECRKQMA DTRPRVRGRF AKVNSSDTLL EFGSAACLPA SSSGNNATTT GSVASASACT 960 APAGVAFHGP GGSGGSGGGG GGGWGLHGHH AHAAPQPHMQ RIDEEGISEG QSPLVLPTAG 1020 SFPMRQASSS SQEAGTGPGP AGGAATSEGA TATATEAAAA AAAGALGAVC GFTSAMITDQ 1080 ARVEPQQQQQ QLLLQDCSQR LQRAQSSSMA DVARMVDSMQ TGLLGSCNNT ANTCSTTVIA 1140 TGAAAAAQGG LGAAGHDCDI TEHDLAALGF DELPQLSGGL SNGGHSMNED MDESAESMND 1200 GVSTMPDCVP VPGARPPSVL QPSGQVVVMQ HTTGVQNPSG ALQPPPSSAA LPQHQHQHQL 1260 QVLGPQQLLA APQSLPAIAS ACFLQQAQHQ HIQTQPLAPP PPQQQLQPRL SVLDRPIMYG 1320 TDRSQFSAAQ LSLLDSILTD QYRPSSGGAA AIGRH*

Sequence ? help Back to Top

Protein Sequence Length: 1356 aa Download sequence Send to blast

MDSSNFKVVC DHCDAKLASV FCHSDGAFLC PQCDAQVHSV NKLAQRHLRV PCQSCPVWAY  60
REAKSRGRLL DMPLAACLTK NLHLDVFDGA SACWPSKNAS SVAMGTPQSD ASSPQATTAA  120
PLVNAGSPNS EVHATAFHQP SNSWSQNSAL AMVTSQPQPM PQPSLGCLSM SQGMEPAEGA  180
RAAAALFSIS PFSACSGGSL QAAANAAVQR PPQPGPERCS VQGVQASTTT TTAAATAAPP  240
PPQQQQQHIS QAAQSQHSQH TLQRAASQEL MDAVDSMDVA MLLDTFGAPL DQLQDNSNKR  300
NGDAVQQQQQ QQQSQVLPQQ ESSAQQQQFM AATQQQQQIV AAELLQSQAS AMCMTSMPSA  360
AVAATGGAAA AAGAPATLGN TLNMSSVWAP LAHQAQVQQQ QQQQHTLFQQ QQQLLQEQLQ  420
QQQRQVQVNA AAIAAAAAGC LAQPSAFAVQ LSEPMAVPTQ QRQQITTARS LSGLSCLSQS  480
GLSSNNTDGQ QLGSARSSNT LLLQSLDQQM TGMATCGLPM MTVAGPMAPT SGGGGGAGVG  540
AAAAGWASIE ATQRQLQQLQ QQQQQTALQY LQQKQQQQQV AAALAAAQQQ QQQQKQAMQQ  600
LLQRAMTEDL PRTSPISIGT AAGGVTAFAS ARRDATVRGG LGLLDPGIGR GRSLAQSPMS  660
LLPVPGTAFA SSSCSLLDNL SGSGMNPSSI AAVAAAAAGR VAPGNPFGVG LLPGAAPGGP  720
TAAMAAAAAA APQPLPGARS LDAAAASSFG ALPTSVVGSG GSTSVSPSNC NTLAGAVAER  780
HVPLTAQQLA QQMVLPGSAP PALGLAASVT MGSCDLSESH LMRMSSDGFD GLIGAAATVT  840
GNSLGNSLGM LGLDSDAAGL LTLLERPDGT LKELDPERAA QLNRQKRMLR MRALAEGAKK  900
VRYECRKQMA DTRPRVRGRF AKVNSSDTLL EFGSAACLPA SSSGNNATTT GSVASASACT  960
APAGVAFHGP GGSGGSGGGG GGGWGLHGHH AHAAPQPHMQ RIDEEGISEG QSPLVLPTAG  1020
SFPMRQASSS SQEAGTGPGP AGGAATSEGA TATATEAAAA AAAGALGAVC GFTSAMITDQ  1080
ARVEPQQQQQ QLLLQDCSQR LQRAQSSSMA DVARMVDSMQ TGLLGSCNNT ANTCSTTVIA  1140
TGAAAAAQGG LGAAGHDCDI TEHDLAALGF DELPQLSGGL SNGGHSMNED MDESAESMND  1200
GVSTMPDCVP VPGARPPSVL QPSGQVVVMQ HTTGVQNPSG ALQPPPSSAA LPQHQHQHQL  1260
QVLGPQQLLA APQSLPAIAS ACFLQQAQHQ HIQTQPLAPP PPQQQLQPRL SVLDRPIMYG  1320
TDRSQFSAAQ LSLLDSILTD QYRPSSGGAA AIGRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946907.1	0.0	hypothetical protein VOLCADRAFT_86975
TrEMBL	D8TJU7	0.0	D8TJU7_VOLCA; Uncharacterized protein
STRING	XP_002946907.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	1e-11	CONSTANS-like 1

Link Out ? help Back to Top
Phytozome	Vocar.0015s0269.1.p