PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0015s0081.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bZIP
Protein Properties Length: 587aa    MW: 59518.2 Da    PI: 6.5597
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0015s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.62.3e-07219278261
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          ++ +r +r+ +NR++A+  R+RKk+++  Lee + e ++    L k+le  + + ++l++
  Vocar.0015s0081.1.p 219 RDARRLKRLLRNRVSAQQARERKKQYVSSLEEQIREQQTHIGLLEKRLEAVEAQNEALRN 278
                          7899**********************************9999999999999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-12217283No hitNo description
SMARTSM003388.9E-8218282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.312220283IPR004827Basic-leucine zipper domain
PfamPF077166.2E-5220271IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-10222280No hitNo description
PROSITE patternPS000360225240IPR004827Basic-leucine zipper domain
CDDcd147046.61E-14232273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MASFGHDNSD LGIAFRTRSN TGPLPLQKSA AGVGAFRGTV ALHGPMTTGP HAVPAPSTTQ  60
LPPQPPLVPA LPAPAPAPPN LPDTFNSLPA PPETVPIAPS ALTPSQRGEL ELARTRAERA  120
AAGRSRLPAP PLPSPPCGGN NVGGGGFAAA AAGPTLAAGL AGGGSAKRHR GGSVPDSSDD  180
DGGDHSDGEL ELARLSPEDQ ERVLKARLAS GGGTGGSDRD ARRLKRLLRN RVSAQQARER  240
KKQYVSSLEE QIREQQTHIG LLEKRLEAVE AQNEALRNII MTMRGFATEN PPQRPTAAGG  300
GGGGAAAAAP HPASAQPHSG LPRQGAPLGA AAGAPGGRGG TPGGARMAVY ANCQPLRPPP  360
QPPLQPDQVV PELPPGHHHF PPLSYDQGEQ EVPPASRGVE QQQQQHLRME EEVQEVQEVP  420
RQHGCEELTV RHSRARPMAA PELPNDTSTA ATAASPLRDG VLPYHAGGCL THAAPLPPAA  480
DELLDRSGDA AGSSCVGGGG GGGGGGGGTT PGAAGGYTAP VNHGSSISAA ELQYPTPMVN  540
QPPANQLGAE ARTILSYGLS YGLSYGDGGG VAPIGMEVPV CDDVGF*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17609.38e-08HY5-homolog