PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0014s0065.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB

Protein Properties

Length: 1155aa MW: 119618 Da PI: 8.3943

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0014s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.4e-13	48	94	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W++eE e l+++v + ++ +W +a+ ++ gRt+kqc+++w + Vocar.0014s0065.1.p 48 PWSQEESEWLIQVVSKTSTNldniNWQDVAKQVP-GRTGKQCREKWKN 94 8*******************************.*********87 PP
2	Myb_DNA-binding	35.8	1.8e-11	102	144	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+ E+ l+ a+ ++G++ W+ +a++++ +R ++ +k+rw+ Vocar.0014s0065.1.p 102 KEPWSLKEEYVLAVAHSLHGNR-WSEVAKYLP-TRPENTIKNRWY 144 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.266	41	100	IPR017930	Myb domain
SMART	SM00717	1.7E-11	45	98	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.24E-23	46	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-17	48	102	IPR009057	Homeodomain-like
CDD	cd00167	4.20E-11	48	94	No hit	No description
Pfam	PF13921	3.2E-12	49	110	No hit	No description
SMART	SM00717	7.4E-10	101	149	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.296	102	151	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-16	103	147	IPR009057	Homeodomain-like
CDD	cd00167	9.45E-8	104	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1155 aa Download sequence Send to blast
MSRRCRNYCD DSDSDVDLPR SGRASRSAAS RKGSGEFGMK NRKEQSRPWS QEESEWLIQV 60 VSKTSTNLDN INWQDVAKQV PGRTGKQCRE KWKNDLRPNI CKEPWSLKEE YVLAVAHSLH 120 GNRWSEVAKY LPTRPENTIK NRWYATNRAK AEVKVRTFLW LYSDLVDRQS YPAGPEAIDK 180 ARELYRQLPD VVPLEEFEVP VDFYIARSES GCPAALDTRP EIKIIGRGKA KPHVPGATTV 240 GGGGGGGGGG GSSAAAAVLS AVRGAAAAAS ASRAARASAG ASGSAAPPAA SATAAAAVAV 300 AVAATGTGAK GRSGDSGGGG HSEGDANCYV KVGGLAGDLP TVGPVKVTPR KRKGHGLADG 360 SERATAAGHH PVHKLVKAEP LTADGLGVAV AAGGDAVAAI STRTRGAPAE ATRSPPLAGS 420 HMAPSALPVP SPPASMTASA PVTVTTGAGR GGSIDGTAPA SHAAPTLDPE FLWQTAIEPF 480 SSHGNGLGTQ KGRRASANRL GNGATAHMHS SATSVGMYGA TCVGGATNTA ATSTGIAPGS 540 VVIVHQGEHD SLHSIFASNA RTVGSEGGAS SAADLNGLFP GSLNGLLEDP DGPGGGSGGD 600 ADQDLLALTD GLDLASLTAL IGPHEVHGEA TSDCAHEAMA GLAADVLSQV PAEPVMQRMA 660 HHQHQHQQPG HLPQQTVTTP SPHALGPSNL QQTQLLHHHH HHHHHHHQQH PHHHQQHPHQ 720 QQQQQQQNSL HYGQQHLTLP MRHAASMGSA QQQAQQQAQQ QQQHQHQRQL SQQQQQQQHA 780 HHHSLSQGSY PLHPQQQLMQ THEGACSPPQ QPQPQPQLQQ QQQQQQQLQS MTANGGVALS 840 HQQQPQQTQG QGDVSSPPLP PQLQQQQQQL QHPLTGPSGA HDVTGCGQSY TFQRRLPSSA 900 VSATSRPPSG SVSTPTASAA VQQQQPTHHP LSQHPMYGSP SYLPHPHSHP GSGPPATPAQ 960 MVHPSSGNGG RPIIPNGPSP SPVKYGMTSP YAAAPPPSAA YAVSGPPPPP YMMPMNMRGG 1020 YYKMPGGRMP VGVLPRGMMP YPPPYGMSVY SHGMPSGYMD SPQQPGMVGG PGGDGAVHHP 1080 QQGGPLDQCS PAGASGPTSG PMRTSGVISQ GGGGAGPGGA GMDSLSALGP LSMGRAYSDL 1140 TPAGPAAPAA GPAM*

Sequence ? help Back to Top

Protein Sequence Length: 1155 aa Download sequence Send to blast

MSRRCRNYCD DSDSDVDLPR SGRASRSAAS RKGSGEFGMK NRKEQSRPWS QEESEWLIQV  60
VSKTSTNLDN INWQDVAKQV PGRTGKQCRE KWKNDLRPNI CKEPWSLKEE YVLAVAHSLH  120
GNRWSEVAKY LPTRPENTIK NRWYATNRAK AEVKVRTFLW LYSDLVDRQS YPAGPEAIDK  180
ARELYRQLPD VVPLEEFEVP VDFYIARSES GCPAALDTRP EIKIIGRGKA KPHVPGATTV  240
GGGGGGGGGG GSSAAAAVLS AVRGAAAAAS ASRAARASAG ASGSAAPPAA SATAAAAVAV  300
AVAATGTGAK GRSGDSGGGG HSEGDANCYV KVGGLAGDLP TVGPVKVTPR KRKGHGLADG  360
SERATAAGHH PVHKLVKAEP LTADGLGVAV AAGGDAVAAI STRTRGAPAE ATRSPPLAGS  420
HMAPSALPVP SPPASMTASA PVTVTTGAGR GGSIDGTAPA SHAAPTLDPE FLWQTAIEPF  480
SSHGNGLGTQ KGRRASANRL GNGATAHMHS SATSVGMYGA TCVGGATNTA ATSTGIAPGS  540
VVIVHQGEHD SLHSIFASNA RTVGSEGGAS SAADLNGLFP GSLNGLLEDP DGPGGGSGGD  600
ADQDLLALTD GLDLASLTAL IGPHEVHGEA TSDCAHEAMA GLAADVLSQV PAEPVMQRMA  660
HHQHQHQQPG HLPQQTVTTP SPHALGPSNL QQTQLLHHHH HHHHHHHQQH PHHHQQHPHQ  720
QQQQQQQNSL HYGQQHLTLP MRHAASMGSA QQQAQQQAQQ QQQHQHQRQL SQQQQQQQHA  780
HHHSLSQGSY PLHPQQQLMQ THEGACSPPQ QPQPQPQLQQ QQQQQQQLQS MTANGGVALS  840
HQQQPQQTQG QGDVSSPPLP PQLQQQQQQL QHPLTGPSGA HDVTGCGQSY TFQRRLPSSA  900
VSATSRPPSG SVSTPTASAA VQQQQPTHHP LSQHPMYGSP SYLPHPHSHP GSGPPATPAQ  960
MVHPSSGNGG RPIIPNGPSP SPVKYGMTSP YAAAPPPSAA YAVSGPPPPP YMMPMNMRGG  1020
YYKMPGGRMP VGVLPRGMMP YPPPYGMSVY SHGMPSGYMD SPQQPGMVGG PGGDGAVHHP  1080
QQGGPLDQCS PAGASGPTSG PMRTSGVISQ GGGGAGPGGA GMDSLSALGP LSMGRAYSDL  1140
TPAGPAAPAA GPAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	48	152	9	109	B-MYB

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8667	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40360.1	2e-26	myb domain protein 115

Link Out ? help Back to Top
Phytozome	Vocar.0014s0065.1.p