PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0012s0162.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1041aa    MW: 100519 Da    PI: 7.6699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0012s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162065147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+WT+eEd ll ++++ +G+++W+ +a+ +  gR++k+c++rw++ 
  Vocar.0012s0162.1.p 20 KGAWTPEEDALLTKLITTYGTKNWSIVAAGIR-GRSGKSCRLRWHNQ 65
                         79******************************.************96 PP
2Myb_DNA-binding42.41.7e-1372114145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +++++Ed  ++ a+  +G++ W++Ia+ +  gRt++++k++w+
  Vocar.0012s0162.1.p  72 KEPFSEWEDAVIILAHDVHGNK-WAAIAKLLC-GRTDNSVKNHWN 114
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9611570IPR017930Myb domain
SuperFamilySSF466891.56E-2717113IPR009057Homeodomain-like
SMARTSM007179.7E-161968IPR001005SANT/Myb domain
PfamPF002492.4E-152065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-232173IPR009057Homeodomain-like
CDDcd001678.74E-132264No hitNo description
SMARTSM007173.4E-1371119IPR001005SANT/Myb domain
PROSITE profilePS5129418.09571121IPR017930Myb domain
PfamPF002494.4E-1272114IPR001005SANT/Myb domain
CDDcd001678.10E-974117No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2074121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MASDDMDVDA EQWGGDDIKK GAWTPEEDAL LTKLITTYGT KNWSIVAAGI RGRSGKSCRL  60
RWHNQLNPDV KKEPFSEWED AVIILAHDVH GNKWAAIAKL LCGRTDNSVK NHWNATLKRK  120
VNTNTLRNRF LRERYSLQWL LDHTELDSSR QKEGKSEISI NGNWAGKATK RAQATLTASA  180
AASGGAGGGG GGGFTRSRRG GGGGGAAAAN RRSRSVDSGT ASDEPGEGDF DARDDGGGGG  240
GGDDIGVGAA GPMPCPLSDA ATALQRLNHK LPFSTAALGP GALGFSPPGT LSGGGGGGGG  300
GLGQAALGMG SGGFGPAGLG LGVGPLGLLG PGGGGGGGGP GGGGPVGGLD RTASAAAALA  360
AAAAAAGSLP PLAPSGGSRQ LQVTDLLPPA AALGGLNAGS ASAAAAGGSG GGGSSYDVAA  420
AAPPPPLPGS VGLPALGSLG PLLPLSGGII NSNNISNNSA PIATITGGGG AGAPAAFGNG  480
IHVTPAAAAA AAAAANTSSN NPPSSTSSNT VLPLPPALRP GSGGSANGLG TGAGVGAYGT  540
LPADLELFNA LPEATRLCLI ELARLAGPTV LLGRERDRDR GPSATVAANE VCGGGGVGVG  600
GVSTGQRLRE RELPPPPPLP VQQQQQQHSS AFQDLHGSLP LHSGMGRQRG ASGARVNELG  660
SVGGGRAGRG GEDGGSGGSG GASLGPANGT AHLAAAIGGG SAAAAAVAAL KVQQLYDVLE  720
ELNGSTQQQQ RQQQQQQLQH QAHGSVGHSA AADLGVGGVG GLRLGGGAGG ASQGNHLPVP  780
SALTVPSFPN GNRRDGGDGG GAATGFGQVG LADALGALSG SGEGGNNMGA DATAAALLRQ  840
LARPLHGGGI GGASALGAGG GGGLVGLGNP PGNLLLAGGG GGGGALDIDR LRLLSTAAGL  900
GGGGLAPGRS PAELRLLQPL LAAGGGGGGG GGGGGGGGGG AGALDLCNLM GGSGVGGRVG  960
LQMTALYQHN NHQQQHQQHH QQHQQHQQHQ HHQQHHQQQH PQAAALQQLA ADPVLLRGLS  1020
EELAHLLTAV DSAAAATSNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-41141231110B-MYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-41myb domain protein 109