PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0012s0159.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 1067aa    MW: 104420 Da    PI: 7.064
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0012s0159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP92.83.4e-29739816178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +C+v+gC+  l+ +++y++r+k+Ce+h k ++vl +g+ +rfCqqC+rfh l+efD ++rsCr+ L++h +rr k+++
  Vocar.0012s0159.1.p 739 MCHVQGCHRSLQGLRDYYQRYKICEFHLKVSSVLKDGVPHRFCQQCGRFHPLTEFDGDRRSCRTMLQRHCHRRAKQKQ 816
                          6*************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546951.1E-1428137IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.107.6E-1928138No hitNo description
PfamPF006515.1E-1434136IPR000210BTB/POZ domain
PROSITE profilePS5009710.86142109IPR000210BTB/POZ domain
SMARTSM002251.3E-942139IPR000210BTB/POZ domain
Gene3DG3DSA:4.10.1100.103.5E-28733801IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.803737814IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-26739817IPR004333Transcription factor, SBP-box
PfamPF031101.5E-27740813IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MPVLQLDNRR EALAKEEAPC HLDLSKLIQS GTKTFFNNPA LSDLTLVCPD GRALHCHSII  60
LAAASRRFAA ALKQGNWTPG QQMPVKGVDS DALETLVCAF YTAECPLELG KVPALYDAAV  120
KLEVPSLAPA LEQYLNSALQ PHNCCQVLEL CLSMGVSQLS DLVLAWIRGR VSDVVPSAEF  180
RSSRLETAAC ICKDLAHRSQ LVGLQAAVSW LSASAPRSSL VGVFAEATGL TVDAIQAVAV  240
SGAALGPVGH GGSGGSINGL SGGLLQFSGH SGHVSHGIGH GGHGGGGASG LLGSGIAAAT  300
HPAAQSLNLS QALGPGGGGG GGAEGTLGGG SFGLSAGTGL GMAASNGGGG GSGTVQVLQL  360
LPTASGSQAA VLVMPSGNGN GGAGGISGES GHHTHGVHHH GLGVGGLQSL LTLHDGGGGG  420
KGGNGNGLGA LGLGSGGGHS GGGGSAMGFG LDALADAAEG ERVQKRLRGA GAGGPPCGGG  480
GGGGACVGPG MGIGGGGGFT AAAESGSATS MHSDMSGGGK RMNGLDDRPQ HLPSGRMGPR  540
DPNLALQQQQ QAAAMNHHTG KQLQQYQPQS QQQQQQRGSK PVGSGRGGVG GRRRRAASAS  600
DDDEDYAPSG GRSGAMNGGV GGGGCGVNGV GGGGGRARAQ DFVYGAETLL DGPSAAGGGE  660
GGGGVGGEVG SDPGEDDAGG QNGGDDDVDT GGGAAGDVAS PKPGGGAGSG GTSGGGGGSA  720
QGGTPVLMTG RRAPAQKGMC HVQGCHRSLQ GLRDYYQRYK ICEFHLKVSS VLKDGVPHRF  780
CQQCGRFHPL TEFDGDRRSC RTMLQRHCHR RAKQKQELAE VLAQRFEEKQ VAASMSAVVA  840
AMARNAQAAG GMANLSPMLH LQYLAGLPAA AAAAAAAALD EEQLGSLGAA AALKGTAAVR  900
SGGSNAGSDG SGGSAKTRAG PMAANGRAGR GSLPPGLHSP PSKAQLFDAV QRARKQHVQA  960
QKQLFGLAPD VPLAAALAAA ATVVGNDRHD DAMHDDVPSD GGGNGLYSMQ QGPQLGVGAD  1020
NGDGGSAGGV DGVGPAGSGD AAPWALKMGA SDCGGSGDLA AGGDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-157398131084squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-20SBP family protein