PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0011s0308.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 555aa    MW: 58254.4 Da    PI: 7.3751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0011s0308.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-132176148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                         +g WT  Ed++l+++v ++G g+W+ Iar+++         gR +kqc++r++ +l
  Vocar.0011s0308.1.p 21 KGGWTNVEDQILKRLVDEFGEGNWSVIARHLNsalgkpaeSGRIGKQCRERYNHHL 76
                         688*************************************************9886 PP
2Myb_DNA-binding51.91.8e-1682124145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT+eE+ llv a+ ++G++ W+ Ia+ +  gRt++ +k++w+
  Vocar.0011s0308.1.p  82 KDAWTEEEEALLVSAHLKFGNR-WSDIAKVIK-GRTENAVKNHWN 124
                          679*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6261876IPR017930Myb domain
SuperFamilySSF466893.74E-2619123IPR009057Homeodomain-like
SMARTSM007178.1E-142078IPR001005SANT/Myb domain
PfamPF002491.4E-122175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222384IPR009057Homeodomain-like
CDDcd001671.76E-112476No hitNo description
PROSITE profilePS5129426.35977131IPR017930Myb domain
SMARTSM007171.5E-1581129IPR001005SANT/Myb domain
PfamPF002499.4E-1582124IPR001005SANT/Myb domain
CDDcd001674.62E-1284127No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2085130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSVETELLNE KRRRYPLAKV KGGWTNVEDQ ILKRLVDEFG EGNWSVIARH LNSALGKPAE  60
SGRIGKQCRE RYNHHLRPDI KKDAWTEEEE ALLVSAHLKF GNRWSDIAKV IKGRTENAVK  120
NHWNATLRRK DTDKCGSRSN GPPQSCVLKD YMIRIALLPG PPSGSGPPGN AGGGANNGKP  180
SFSCSPTPYT GLAPGLSSCV AMEDAVVTVG GGGATRVMKA CELDAPSAVR CADDVLTKPT  240
APGHVMQREQ QQPPVAKRAV RAGLDKRSAA DDAATVGGIT TALPSVMMGG VGQVAGSSPC  300
SSSSSHEGLV AAHPRRSFDA NAPSLPATSN AIAAAAAFEA PAPVRKRPRI ITFAAIGPPV  360
AVAATDVLAA PATAAAPAMP MRVPGPQLRS SNATHWPTDS TPAVMATAVR SVGAEATAHY  420
QPHLLAHVSR PEDLGPDSHP LASGSAALHL HAPSRPRQIC RRGPERQPGW ATDSAEESAH  480
GSPVSERFER FEEVEEEEEE EEGCDGGEGR RTDRREEVED CGGGGGAVSD GAAVCSEIQA  540
AQIMLALKRL AGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-38201303104C-Myb DNA-Binding Domain
1msf_C3e-38201303104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914EKRRRY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-38myb domain protein 119