PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0011s0018.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 524aa    MW: 52825.3 Da    PI: 6.3589
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0011s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.46.5e-36211287278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C+vegC+adl+ + +y++r++ Ce+h kap+++ +gl+qrfCqqC+rfhelsefD +krsCr+rL++hn rrrk+++
  Vocar.0011s0018.1.p 211 CHVEGCNADLTGLSSYYQRYRTCEIHLKAPSIMKDGLQQRFCQQCGRFHELSEFDGNKRSCRSRLQSHNVRRRKRTE 287
                          **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114128.308208285IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.9E-30210272IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-32210290IPR004333Transcription factor, SBP-box
PfamPF031106.3E-32211284IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MQAGDDAAAA AAADTVASQN LLASIAGILQ NTTAALPPGP PSNAPLGTTP GQGGPGGSPS  60
QTRTSSNGGS SNANAQGVGL SPGLILLPAG LPFLNAPGLQ GLQNLGPYLQ LLPGLGPGGL  120
GAGDGSVPFA LPPLGLDGQL NLAALLGATG LELEGQAADL SVLDPTRKTP GVAGSKRPAD  180
GSAGAPYKRE RSEEGRSRES IPNLPHLKGK CHVEGCNADL TGLSSYYQRY RTCEIHLKAP  240
SIMKDGLQQR FCQQCGRFHE LSEFDGNKRS CRSRLQSHNV RRRKRTEEQM ANAAAESQAQ  300
VGMPPGALQA QGLSALTQLP LQPPHGLLGP QQNLTDLLSQ AGMESLLNSA LAGAAHDPSK  360
QGKPEDALTA LLNQLPQLPQ QLLSGLATPD ANQAALLALQ TMNNEHLAPP FLDSLLKSAT  420
AVVPPGPVPS DLPPQDLQQQ LGLLLAGAPA AAASIVGGDS GGVVDPSGLG AHVGDPSHVH  480
AAAHAHGDAH HPKPENAALG GATGVHVGPG AGEGHPAEAV AQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-252112841184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GY121e-120A0A150GY12_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-27squamosa promoter binding protein-like 3