PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0011s0012.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 605aa    MW: 60516.9 Da    PI: 6.1315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0011s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181863147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+WT+eEd +l ++v   G+++W++Ia++++ gR++k+c++rw++ 
  Vocar.0011s0012.1.p 18 KGPWTPEEDTILRQLVMSQGPRNWTSIAACIP-GRSGKSCRLRWLNQ 63
                         79******************************.***********996 PP
2Myb_DNA-binding51.32.7e-1671112245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          g++++eEd  ++ a+ q+G++ W++Ia++++ gRt++++k+rw+
  Vocar.0011s0012.1.p  71 GPFSAEEDAVILWAHMQYGNK-WASIAKHLP-GRTDNHIKNRWN 112
                          89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6011368IPR017930Myb domain
SuperFamilySSF466893.13E-3016111IPR009057Homeodomain-like
SMARTSM007176.7E-161766IPR001005SANT/Myb domain
PfamPF002491.6E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-251971IPR009057Homeodomain-like
CDDcd001673.28E-142062No hitNo description
PROSITE profilePS5129420.01969119IPR017930Myb domain
SMARTSM007171.7E-1369117IPR001005SANT/Myb domain
PfamPF002498.2E-1471112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2372118IPR009057Homeodomain-like
CDDcd001673.53E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEVALFTDGA HGDDDVTKGP WTPEEDTILR QLVMSQGPRN WTSIAACIPG RSGKSCRLRW  60
LNQLSPSVKS GPFSAEEDAV ILWAHMQYGN KWASIAKHLP GRTDNHIKNR WNCTLKKKHA  120
DIMGQLRNET GPDGAVSIAA IHNVLISQQQ GGTRGPLIRG AGPTALPGKG PAAFMGPIAG  180
LGALGRDPSG APTLLPPGLP QALSGALAGA LPGGLSGLPP PLGTGLPGGL PPMMLGPMAT  240
AVAADQERRL RLAGGGGSAF SAYGNGGAKQ SDEQRGVKRS RRDGEQGTSD AESDEDSAAV  300
ALKQLAHQDP RDGNREGDAA TANNSNNNNN NNNNDGNNNN NAKGAGGAST GGTEDEDGAR  360
REEGVAPGEG AAAGREGEED NQGDRQDSEG GRGRGSDGGS GRQGAEAGPS GGSKPQRSGG  420
QPKSESTAAA GSNAANAKGG KAVPAGALPA GFTGMPSGGA GPAAGAAGDP LMQNAAAAAA  480
AAAAAAAAAS ANVPLPNSAA ANYGQLLNQL PETLMQLSST LRVVLTAGNI PAAQALVSKL  540
EELAYSVLMQ RAAFNLATAE TNTVQQHPLP QQAPVAVPAP AINGGGVDPQ ILAQLLLLSA  600
QGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-34151181104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GY241e-133A0A150GY24_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-44myb domain protein r1