PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0009s0293.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 1256aa MW: 130813 Da PI: 7.6081 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.9 | 3.4e-10 | 16 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGV+ +k++ +W+A+I + +++ lg + t+eeAa+ ++a +++g Vocar.0009s0293.1.p 16 LFKGVTLYKRTSKWRAQISHG-----GRTVTLGDYNTEEEAARVFDRACICKYG 64 69****************993.....4****************99999877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.44E-12 | 15 | 72 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-12 | 15 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.932 | 16 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-6 | 16 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-12 | 16 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-10 | 17 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1256 aa Download sequence Send to blast |
MEALALVAKA SSRHSLFKGV TLYKRTSKWR AQISHGGRTV TLGDYNTEEE AARVFDRACI 60 CKYGKDAVCN FPLEDYMSEW EELWATTIPA LLIKFKEERQ RCKAARGPGG VRAGAQNQAS 120 QPRPSQELVV DGDQAQSPRP PSSFFVPRIK PATFASNRKA QPRPPPASSL PPKPTVAAAA 180 AAAAAAAAAS PFRTDNAFKD ELHAGLYSFL KAAGQAALGQ QFEQDRIRPE VVAALEGSST 240 TGRHGRGLDF QSAYFPGTAY AHPGPSGQLC AGNPVGGPLN QIQIQIQNFN DHRRTHAEQL 300 KMEMEPSENI ERATSDDGDG DGAHHLEPTP ATSSPAAVRR RATASRPAAT GTAGGGGGGG 360 SPPDVLSPAS SSPNRDRLAS LLWRVRSVPC PQAATEWPIP EAAAAAAAAP PDELVTVFTG 420 ADGASRREGL AAATRPPPSM PLLNFPPPMR LHGSNYVPSW RRASVCSGRM GIEGGEFDGE 480 SVWKGHSEVF LSGSGTAAGD ADATAAQQRR VVHSPVAQPS VPQPPSYPDN FRAQQHGSDG 540 GALDEMPYMV DYTSGRVVLP TRLGFPTLPL LNLPAPRTLT AKRTVREEMA VVAAAEVETD 600 DVGGTGFAAA APQSPVASTH AVPSGFRALG TPLQELGLDP SHAAVPRGMV VRRVHYSTSP 660 WPPAKRLRLA AIAAAAAPPP PPAPQTDEEP MGVVMTTTDT AAGEGEEEEE EVDRNARFAK 720 SSGSDGAGRA AECRSAVVRR WRCGPPSGES AAAMARFTAA AGERGTAVAA AASRPPMTTT 780 RDGVSREGSC RQRPPEPEPH TSPVPAACAP SSAAVTLQPG ATCASPVAAP PAAAATAAAA 840 TAAAAAVEGL SMEELHELLL AALSRREEDL VQQKSLARMR QQQQYRRQQQ QQQQQDVLLR 900 LAEAFALRTG VLTEATRPQG IIEEPAAAAA GGGDTDAMWY GDCSEGGRAT AAAGGIQLRK 960 RRCADDDDVG GVIAVNDMLY DRPASPVPLL ATKVPRPLTL QSLPSLPPPP AQQQQQQQWQ 1020 QQEHKSSGGG AAVAPPPPHR QECTAVSADS PASSSSGGGS IIRDVRFLAD TPAPAAAASA 1080 PAAAARRGHQ HLPSANAPPR LSLQTSHPGG SKETEALKNP SSQATRGSSG GGSIDRTPSH 1140 VSPLVVAPAA AAAAAAVNGG DAAAAGGSMF INQAPGQKWR LPASLHDWEH TLHERPRAPA 1200 VRLTLCRNDE YDSYSVGGSV GGGSNRGADA SLSIEVPLVL RVPANLQQQI LSMLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 349 | 360 | TGTAGGGGGGGS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002947606.1 | 0.0 | hypothetical protein VOLCADRAFT_87913 | ||||
TrEMBL | D8TMK4 | 0.0 | D8TMK4_VOLCA; Uncharacterized protein | ||||
STRING | XP_002947606.1 | 0.0 | (Volvox carteri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-09 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0009s0293.1.p |