PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0008s0074.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

AP2

Protein Properties

Length: 1362aa MW: 139594 Da PI: 6.9729

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0008s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.1	1e-13	40	89	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+w++k++rW + I + ++++lg+f+t+eeAa++ ++ + +++g Vocar.0008s0074.1.p 40 SCYRGVCWHRKSKRWQSAINS------SgRHVYLGSFDTEEEAARMFDKVAIRIRG 89 79************99888......44**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.55E-14	40	98	IPR016177	DNA-binding domain
Pfam	PF00847	1.8E-8	40	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.9E-16	41	97	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.316	41	97	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-14	41	103	IPR001471	AP2/ERF domain
CDD	cd00018	3.00E-14	42	98	No hit	No description
Gene3D	G3DSA:1.25.10.10	1.5E-4	773	849	IPR011989	Armadillo-like helical
SuperFamily	SSF81995	7.06E-5	1026	1090	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1362 aa Download sequence Send to blast
MPDDDILCNK TAVKEHGGAK IAAGDALPGG RVSGTRVATS CYRGVCWHRK SKRWQSAINS 60 SGRHVYLGSF DTEEEAARMF DKVAIRIRGA KAKLNFPYKD YVGPDGEFLT DPKLEQLVHA 120 AYKALLEKQQ RHRAIEDGHA AGSGGGGGSG AGAKRRRLGS AAAGLASDDS EPGDLNCSVG 180 LPLSAVPWNA GRLGWGPGPE RCAGANVGYD FGCSPGGGGG DGSDAVMHPM HGAMGRTGLW 240 GPVAGVVAPS GGHGPAEPLS PPSPTAPPAA GQCDAGMAPL TAQQPGDQRV PYHHHHQLQQ 300 QFQDQHFVPK DAIGLTPGHF GDHGCGGGLT ATATAVAGAS TGLPSAAVHN PPTPYGGTPR 360 HRAYAGLCLD LGRPEVAGGV GGGGADGGGG DGPAAAAAAV AECLIGELGG RSGSAAPNTN 420 CRLADGSDNG GGGGGSGGGC CGGGSITAVA AVVDSTARTH EPGAAAATDG GADGVRELDV 480 VSLIRQFIKG INGQLPLGME IDSLIPCADG SLLGYTLVRR VVSERLAELC SSSSNNSRSG 540 SGSAVAHAGG GSGGNHGSSG SGGVNTTALP TAATAAAASG SNRDTAGDGA DCTASGSCTC 600 LRDRTHGGSS GIGSSLPQMC GSSGNSDAAG GGGGGSSSCT AGAVAGAGIF LRGTYRSLGT 660 YSTTADAIQA CKSCLTVLME YKDELLLTSA AATAPGLRCG SGGGGGRPVV RAPLAAAPAQ 720 ARPPAPKAAS IVLSAATAAA VETDEPPERP GAVAAGVSGR QQGNLSRDCP VTEQQQQQQQ 780 PQPQQQPQQV QQVQQQQQQQ QQQQVQPPPP QQVQVQDDDA TEGQNDDHPR QLQLFVQRLI 840 HHQQQQQLQP HHHQQQLQPH HHQQQLQPHQ QQQGGRIHTH PASRYLVQSG RIVVLPREAD 900 FPEAVSAAAG IRTHSGSFIS VADDVYDSLY DADNTLSHPK RTCISRQADG SDSGGFLRSY 960 PRQVQQQGIG AVADADERQL HAVLLEPVRQ RQEISEQLPF AESRSASHVL AQLIANLLDP 1020 SRHLKSPQQQ VQAPGKAQQQ QEQHQQHQHH QQQQQQQQQQ QYQHCKQQKH CYHAQQNEEQ 1080 QQQQQQQQHQ VMRTCDRRGE CGSSEVVNDT EIVLFGGGGS GGGGGGGATA VSAAGGSPTS 1140 ALVRGGKRNG VAADDGDGSG YGRNTSGSCD STDDTFLPPP GLQRRLPPPS LHAVLPGGGG 1200 GSGGGGHNRD GGVCCPAGPR YPLHYPGRPV VVVQRANDPL ASGEIRLGGG GGDDDAGGRV 1260 DRNGNHHPAQ RHWDMGAAAI WRRHGEAAAL ASSSAAAAAA GAADGTAAAV TASAPTVLYE 1320 VADGMALTQT TTTLYGKRSP MHDQRRATSV SWWQYQQQSQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 1362 aa Download sequence Send to blast

MPDDDILCNK TAVKEHGGAK IAAGDALPGG RVSGTRVATS CYRGVCWHRK SKRWQSAINS  60
SGRHVYLGSF DTEEEAARMF DKVAIRIRGA KAKLNFPYKD YVGPDGEFLT DPKLEQLVHA  120
AYKALLEKQQ RHRAIEDGHA AGSGGGGGSG AGAKRRRLGS AAAGLASDDS EPGDLNCSVG  180
LPLSAVPWNA GRLGWGPGPE RCAGANVGYD FGCSPGGGGG DGSDAVMHPM HGAMGRTGLW  240
GPVAGVVAPS GGHGPAEPLS PPSPTAPPAA GQCDAGMAPL TAQQPGDQRV PYHHHHQLQQ  300
QFQDQHFVPK DAIGLTPGHF GDHGCGGGLT ATATAVAGAS TGLPSAAVHN PPTPYGGTPR  360
HRAYAGLCLD LGRPEVAGGV GGGGADGGGG DGPAAAAAAV AECLIGELGG RSGSAAPNTN  420
CRLADGSDNG GGGGGSGGGC CGGGSITAVA AVVDSTARTH EPGAAAATDG GADGVRELDV  480
VSLIRQFIKG INGQLPLGME IDSLIPCADG SLLGYTLVRR VVSERLAELC SSSSNNSRSG  540
SGSAVAHAGG GSGGNHGSSG SGGVNTTALP TAATAAAASG SNRDTAGDGA DCTASGSCTC  600
LRDRTHGGSS GIGSSLPQMC GSSGNSDAAG GGGGGSSSCT AGAVAGAGIF LRGTYRSLGT  660
YSTTADAIQA CKSCLTVLME YKDELLLTSA AATAPGLRCG SGGGGGRPVV RAPLAAAPAQ  720
ARPPAPKAAS IVLSAATAAA VETDEPPERP GAVAAGVSGR QQGNLSRDCP VTEQQQQQQQ  780
PQPQQQPQQV QQVQQQQQQQ QQQQVQPPPP QQVQVQDDDA TEGQNDDHPR QLQLFVQRLI  840
HHQQQQQLQP HHHQQQLQPH HHQQQLQPHQ QQQGGRIHTH PASRYLVQSG RIVVLPREAD  900
FPEAVSAAAG IRTHSGSFIS VADDVYDSLY DADNTLSHPK RTCISRQADG SDSGGFLRSY  960
PRQVQQQGIG AVADADERQL HAVLLEPVRQ RQEISEQLPF AESRSASHVL AQLIANLLDP  1020
SRHLKSPQQQ VQAPGKAQQQ QEQHQQHQHH QQQQQQQQQQ QYQHCKQQKH CYHAQQNEEQ  1080
QQQQQQQQHQ VMRTCDRRGE CGSSEVVNDT EIVLFGGGGS GGGGGGGATA VSAAGGSPTS  1140
ALVRGGKRNG VAADDGDGSG YGRNTSGSCD STDDTFLPPP GLQRRLPPPS LHAVLPGGGG  1200
GSGGGGHNRD GGVCCPAGPR YPLHYPGRPV VVVQRANDPL ASGEIRLGGG GGDDDAGGRV  1260
DRNGNHHPAQ RHWDMGAAAI WRRHGEAAAL ASSSAAAAAA GAADGTAAAV TASAPTVLYE  1320
VADGMALTQT TTTLYGKRSP MHDQRRATSV SWWQYQQQSQ Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	157	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002954436.1	0.0	AP2 family transcription factor
TrEMBL	D8U6X0	0.0	D8U6X0_VOLCA; AP2 family transcription factor
STRING	XP_002954436.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3683	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39250.1	2e-14	AP2 family protein

Link Out ? help Back to Top
Phytozome	Vocar.0008s0074.1.p