PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0008s0006.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1686aa    MW: 182516 Da    PI: 8.9867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0008s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-1392156146
                          TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46 
                          r++WT+  +e+l+ av+ + +                     +W+ +a+ ++ gR++kqc++rw++
  Vocar.0008s0006.1.p  92 RKPWTKCQHEKLIAAVEAHQKAlaaaaggglgeasdgnemriNWTVVAESVP-GRSGKQCRERWHN 156
                          789*****************99******************************.***********98 PP
2Myb_DNA-binding44.43.9e-14165208146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg WT++Ed +++++++ +G+  W++Iar +g +Rt++q+k+rw +
  Vocar.0008s0006.1.p 165 RGQWTEDEDRIIARGHATWGTA-WTRIARNLG-RRTENQVKNRWST 208
                          89********************.*********.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.46687158IPR017877Myb-like domain
SMARTSM007174.6E-1191160IPR001005SANT/Myb domain
PfamPF002492.7E-1092156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1593168IPR009057Homeodomain-like
CDDcd001672.85E-794157No hitNo description
SuperFamilySSF466895.74E-21138216IPR009057Homeodomain-like
PROSITE profilePS5129421.525160214IPR017930Myb domain
SMARTSM007171.4E-12164212IPR001005SANT/Myb domain
PfamPF002494.5E-13165208IPR001005SANT/Myb domain
CDDcd001678.25E-10168210No hitNo description
Gene3DG3DSA:1.10.10.601.1E-15169211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1686 aa     Download sequence    Send to blast
MTKTVALTND PARSTRAQGW PLNLGEDGQS SAESNLNRKR RESDEDWATT TADSDDESEE  60
DSDADDDSAQ TERSPRARSN AGGSGSRSNS RRKPWTKCQH EKLIAAVEAH QKALAAAAGG  120
GLGEASDGNE MRINWTVVAE SVPGRSGKQC RERWHNICSR PNAVRGQWTE DEDRIIARGH  180
ATWGTAWTRI ARNLGRRTEN QVKNRWSTVV RATKKKSAAC STARLLGYVM CIQKGMKPAD  240
AYRTVFQDDL PTTSPGGATD QPTNPAGTDA LAAIPSTSKA DNGKQRQAVS TSGCRAGSTQ  300
AVTTPAILRT AAIPSAAVRS SMVALLRSGG GKNPPGQQPQ PQQQQQRQVP PPQVSQPPLQ  360
QQPQQQQQQR QPPQQQQQQP QQQPQQQQQQ QLLTQPQARP EPEQMPPPLE HPLPPRASQQ  420
QLILPQQQLQ QPLPAQQQQP LPPQLSSHQH QEQQQQPPLR APQQQLPPPS PQQVLQLPPQ  480
QLAHLTPQQQ QHQQSLLQQQ MLSQQHSQQQ LRMLQQPSQV PLPQHHHQHQ QALPLLQQTP  540
SQQPSTSQQH WLQQQRILPQ QPQQQQMPLR QQVLSQQHSL AQQRVLPQPQ QQLQPQTQRQ  600
QQMMMPPPQV PTTLPQRGMK LSQQQTSPPQ AVPQHPLQQQ QQQQQQQQQQ QQQQQQQQQQ  660
QQQQQQQLQT QILHPRQVMH SQQQLQPSHL QPAAQVQAPL QGSHPQHLQL PQPRQSQQLL  720
QQHMYLQQQQ QQQQQQQMPQ QQQLTQQQLL QQHMHQPPPQ QQLQQQQMQQ HMQQQQMQPQ  780
HLQHQQQLQQ QQQQLQQQQL QQQQIQQQQQ QMQQQQLQQQ QMQQQQLQQQ QMQQQHLPQQ  840
QMQQQQLQQQ QMQQQQLQQQ QMQQQHLPQQ QFQQQQFQQQ QIQQQQLQQQ QLQQQQLQHQ  900
QHLQQQLQQQ QKLQQQQKLQ EQFCNQAVHC QPLQPPKPAE PHKPPPVDST SIRVPPPYGA  960
SQQSWSSCMT SHSLSILPVT GATSVKEETV QEEKKELRDM KCEQREQEPG PEIRAPCNGR  1020
PAAMAVGYLN RRVEMATVDA IPGAFDHTAR PGATAQLNET AWVALQQQPS ALHGPLLGPA  1080
PRVVPKPADK AAAGSNGPLP VAMVQGVQGG VSSGRFELAT ATQGETATIQ LPSSNSPPPV  1140
MSAPEMAGCT SYPLTGPMFS AFKNEDLAVL ALTGATGTPT RKRLAERSCS APISEPPGQR  1200
TAPEFALLPS AAHTTPVAMA AAIVTIAASG GSDGSTSKRP RLSLEGLRCE GTAGGPVGHS  1260
AVAGALTAAA VYCRSTGSPP PASPETRPSP QSSPQRQVSD SPGMQPSPPV GGISQAPGVA  1320
GQPTTRKEST LLTSQSTAKA GTVALQPQHP ASSGQLDSLA AVQQCTAHLV SSVTAAIRQC  1380
NSETISLPTA LVRTLLNLAG GQEGHLQGNA RAAKDCKVAI AAVKATAGGS EEAEACNQDT  1440
ARATGCNSSD DADATVAVTM QGGGTKASPQ RTLQQHMRHG GNEGGAAITV LKSAASTGRA  1500
TATVASPPAK ANLAAAASTA PPSGCPAAPP AMTDSGSCVR AAHATGSGGG VGVAPAATAA  1560
AAASGSGSNP GAVGGASPMP PPPPPPPANA TGAAPAASSG GQQVPFSGPN AFGDTQIDSV  1620
DMDWLAGLRF QTSVPGAGAE GTAGLDHVVV APGSNLHVTR RMGSMPLMTC STPSESFIES  1680
VFSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19922117105B-MYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1474122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.12e-20myb domain protein 100