PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vocar.0006s0348.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 183aa MW: 18940.6 Da PI: 7.9546 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36 | 1.1e-11 | 22 | 45 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+ lL YP GA++VRCa Cd Vocar.0006s0348.1.p 22 CGGCQQLLIYPQGASNVRCARCDY 45 **********************96 PP | |||||||
2 | zf-LSD1 | 46.1 | 8.1e-15 | 62 | 86 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lLsYPr+A sV+CalC+tV Vocar.0006s0348.1.p 62 CNGCRVLLSYPRNAQSVQCALCHTV 86 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 97 | 121 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC ++L+YP GA sV+C++C+tV Vocar.0006s0348.1.p 97 CNGCNIMLQYPVGAQSVKCSVCHTV 121 ************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.3E-11 | 19 | 47 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.2E-12 | 22 | 46 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.14E-5 | 36 | 120 | IPR011031 | Multihaem cytochrome |
Gene3D | G3DSA:3.90.10.10 | 5.1E-4 | 36 | 124 | No hit | No description |
TIGRFAMs | TIGR01053 | 3.3E-13 | 59 | 89 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-12 | 62 | 86 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-12 | 95 | 123 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.2E-11 | 97 | 121 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MSMYQFPHNG AVPAPAQCHL VCGGCQQLLI YPQGASNVRC ARCDYITTAP AYTGANSAQI 60 VCNGCRVLLS YPRNAQSVQC ALCHTVTQVP VYVYLVCNGC NIMLQYPVGA QSVKCSVCHT 120 VTPVTAATAG AGPGGPTSAG PNGLQQPQRP KPTQTVVVEN PPSYDDKGNE VANIAVGVKA 180 DS* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002947922.1 | 1e-94 | zinc-finger LSD1 protein, partial | ||||
TrEMBL | D8TNV7 | 3e-93 | D8TNV7_VOLCA; Zinc-finger LSD1 protein (Fragment) | ||||
STRING | XP_002947922.1 | 4e-94 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-28 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Vocar.0006s0348.1.p |