PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0102.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 1648aa    MW: 159269 Da    PI: 6.9507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.8e-1376125155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+w+kk++rW A I        + k+ +lg+++t+ eAa+  ++a+ +++g
  Vocar.0006s0102.1.p  76 SKFRGVCWNKKNKRWQAAINS------SgKYLYLGSYDTEAEAAAVFDKAAIRIRG 125
                          79****************888......44**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-876125IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1376134IPR016177DNA-binding domain
CDDcd000184.14E-1376132No hitNo description
Gene3DG3DSA:3.30.730.103.4E-1277133IPR001471AP2/ERF domain
SMARTSM003803.3E-1377139IPR001471AP2/ERF domain
PROSITE profilePS5103213.97377133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1648 aa     Download sequence    Send to blast
MADDSYEEDE AADGVAHAEN HVEEDRHTAS SRRQVVLPGL VPSGTVNGYD AEGLRARALA  60
FGTKAVAISS NKQLTSKFRG VCWNKKNKRW QAAINSSGKY LYLGSYDTEA EAAAVFDKAA  120
IRIRGLKARL NFCYSDYVDA DGKLRDDAAI EEILSDAAIP ATKPRRQRGG GVGGSAPAAD  180
GDIAAAGQVA AAAAGSSASR IRVVARSPAS HPSMSEGGAA GDGPTTTVTV ACPARTGRRR  240
RREEDADSGH WSDGDGAGAA PAQRQHVRQR PNTDGASDRR DVAAGAAAGA AAGGLADRTV  300
CDESCDEGAA TGSEMTGELG ISVSGEPGTT GGPDAAAAAA AAAGGSKDDR GGGGGGCHAF  360
GRAGSGGGGA HRGLILGSLD GGAADVQTAV TAALAGAVAA QLDLAGGVGG AGGLGGMDLR  420
REQLEQLGQL GQLGLVGAGL QGRLHPRGGA AASQQLLGQL ALMQALSAGK VGSGGPQAAA  480
AAAQVHAEQL AACGLGALAG LGSEPLHHHH HHQQVLLVHH QQHHHHHHQH QQTLQYRSGV  540
AAGAVAVGPT LQGAAAVPVA AEPQMMMVRG DEIPREPVGL RSDGVGGGGG GGGGVGNLIG  600
GLGVFHGAHS GADMLPLRRV SLPLRLSQEE HASLAFARLR THPYYHGTRI AGGGGGGALG  660
FELGLHASSK SGEGGGDLRP SLLVVDQVGA NAGPQGAAVY ALHQLGAGGG GDNDGDGGGG  720
GGGGGGVDAL ARLLGGAVRG GGVGLQPPFH LSASLPTAHL DSSGRGGDGG GGGGGGGIGP  780
GGAELSAGSS RHVALLSSLH LHPRSRSYAS SGAGGAGGGG GGGGGGGGGG GGGGGGLNRQ  840
YSEPLRLHDG LAGAAAAPHG GHHNLAASSS VLRLQQHTQQ HQLQQVVQAP SPHRPHHQHQ  900
HHQHPLSLAI SSRPRLGSAG HVTLLLQPDP DAVPVALTSN LVLASTNGWQ QHHQHHQHQQ  960
QVLDEQQRSK PHTQADRLRP ASPLLGGETS PQTGFTVMKG RAAAAAVVGT PECGAAGGAG  1020
AAAAQQAPAA INGPADSGSG GGGGGSGGGG SGGGGSGGGD LFPSVVGVLY RAEAAAATAA  1080
AAAAGAFGVE GAAVEGDGGS GGGATETCAA VWTGRVQRLR RLGGFATEEK AKASCQAALA  1140
MLQDIELATV AAGDPGAVMP APAHGSAGAA AAATATSSCV AATTSIVTRG QQPPQGQGGR  1200
VSGDGGDPER TAFPMIRKGG VCGGGSVAMY DSGGGGSLPP DVLHLSVDAG GVAAAGGGGG  1260
ADAGVGGLDA LAGGHCTAYK LYMSPNTSGG LQLLAESDQG ESGDHSNLAA IALPRRHSGT  1320
GAAAAAAAGT ATLTLDSLGY RLQPVLLGPA ASTPVNGGAG GGSAGNGHAS FAPGRIPTGG  1380
NEGSAGAARP SLGLPAAAAA ANNNNNNNGN QPSPVVNGIS GGGNPSHGSI AATASARRIH  1440
GGFGGGGGGG GGGGGDIPSS AAMAAANGMN GGPSEGELTD ESGVSDRLAG WQGSGNNTAA  1500
AAAAAAAIIK LSAPAGVAAR GGAAHSLPLP ASRNIALAAA AAGEEPADLA AAAAAGSVSC  1560
GGSGSRGSGV RREVSVVHAD PQEPDHNVVA DFYRAAARLC SGGGGTGGGS GGSLTSEFAA  1620
LTQLAHVDVR EALQLFFQQQ HQQAMQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110381050SGGGGGGSGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952573.10.0hypothetical protein VOLCADRAFT_93193
TrEMBLD8U1J10.0D8U1J1_VOLCA; Uncharacterized protein
STRINGXP_002952573.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-08target of early activation tagged (EAT) 2