PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0477.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 858aa    MW: 83983.4 Da    PI: 6.2965
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0477.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP108.54.5e-34484560177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +C+vegC adl+ +++yh r+k+Ce+h k ++vl +g+ qrfCqqC+rfh+lsefD ++rsCr+ La+hn rr kk 
  Vocar.0005s0477.1.p 484 VCHVEGCYADLTGLRDYHLRYKICEFHLKVSSVLKDGVPQRFCQQCGRFHHLSEFDGSRRSCRTMLARHNMRRAKKM 560
                          6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546951.41E-1530136IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.104.6E-1932138No hitNo description
PfamPF006511.8E-1436138IPR000210BTB/POZ domain
PROSITE profilePS5009712.18543109IPR000210BTB/POZ domain
SMARTSM002254.5E-1043139IPR000210BTB/POZ domain
Gene3DG3DSA:4.10.1100.109.3E-29481546IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.248482559IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-30484560IPR004333Transcription factor, SBP-box
PfamPF031102.0E-29485558IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MSSAKAGVLQ LAPQTGEQAQ CYIDLSRLLV TGTRSFYNNP TFSDITLVCP DGRQLRCHQV  60
ILAASSKRLA SVLKQGGFTG SKLPVQGVDS DALDTLIDSF YTGECPLTLA TAASIYDAAV  120
KLEVNGLPNA VEQFVSASLT PNNACLLLER AMGTKTGRLA EVCLQFIRSR LADVVPTLEF  180
SSANMDVVGQ ICTDVANNRH PPQLALQVAI AWLRGPPSGP SRTHLLPALA DQIGISSDIL  240
QTYMRNSGNS PTAGGGGNGG GGGNGGGGSA AAVSLLGEPP SLDGSLSLSS LPLLQLLPAG  300
QLQQLGMGGG AAGAAAAQLL LGQGKGGAGT AALRSLLEED GGGAAGGGGG AGVGSMEGAA  360
LAQRLGNLAG LRRDLEEGAA AAGGFAGALG SMSASGGGRG KRARTEDSRR NSGWEQEPLT  420
SSLGRGPSGD QLDMLLSPSG PGAGGGGGFG GAGGLGALLQ GPQAAAYTAD PPPRDRRTPQ  480
VKGVCHVEGC YADLTGLRDY HLRYKICEFH LKVSSVLKDG VPQRFCQQCG RFHHLSEFDG  540
SRRSCRTMLA RHNMRRAKKM GQGGSPMTDD ANNTAAAAAA ATGANVELGV KLIQQLGTAG  600
LAAAMASLSG GGGGGGGQQQ QQQQQQQQQS QQQQQLAEFG LPDGLSLTDA VAAAMVGLQA  660
NGSSGSGGGG GGGGPGSVST GGLLSSPATR RLNELLDGLG RGANGGSALT QVGSLLEALA  720
GAAGGSSGGG NGSDGGAAGQ RPGSGGGGGG ENAATAEAGG APGAHAGDGG GGGGSSMDCT  780
GMQQLDAVAA LEAMAMAATA AGTMEQSPSG GDAAAAISSP AGGAVGRSVR LHSGGGAAVV  840
ASSGKDVPEG GQAAGGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-224845581084squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002959617.10.0hypothetical protein VOLCADRAFT_101117, partial
TrEMBLD8ULT10.0D8ULT1_VOLCA; Uncharacterized protein (Fragment)
STRINGXP_002959617.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.15e-26squamosa promoter binding protein-like 3