PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0297.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 502aa    MW: 52810.4 Da    PI: 7.8438
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75e-16296330135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgtt++p+WRr   ++  LCnaCG+y+ ++++
  Vocar.0005s0297.1.p 296 CAHCGTTESPQWRRPLTKKVVLCNACGIYFSRHHS 330
                          **************99****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057290328IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-11290343IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-13294337IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-12294338No hitNo description
CDDcd002023.90E-13295342No hitNo description
PfamPF003205.3E-13296330IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLLQQQQQQQ QQLLDRQGRR LRMIDPCEAL AHALLETVRQ ALDDNGGEGR DDFTTAAAQA  60
PMPLRSNIHL STRRTPRSRL SAPPREIYAA NPTRTTTIPD LPYPEPDPEP IAYVHVEGNT  120
RHEPPAKRRR YCSSPVIPKQ AVVRQTYIVA SGPARKEAWT HDPAADAAAG GVMDLHQLSD  180
LEYESFTAAA AAAAAAIAAA AAAAATTGTG SLHPHPETPH SHGSPHANVG VFEDGRDVGD  240
ARDDAPGGGD FVGEHGAVDR TEQNSAGDGS EEALHRNIKK SLQTGSPRTG IPGGPCAHCG  300
TTESPQWRRP LTKKVVLCNA CGIYFSRHHS LPKRKKQIHA MSSSPAALRT SKATPTRAPS  360
PAKTETLTCD ILCDEKLETD EEEAAPPPAA RATAAAAAAA APAAAPLQTG FLGGPVSPSR  420
RGLQGKIWPP LRPSGPLGPS LLPAAHHPAV QDEGPATAAL QCGPAVRERA VLSLPLMAPL  480
PVLGGINTIV QTFLNTSTVT R*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.13e-06GATA transcription factor 26