PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0190.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family NF-X1
Protein Properties Length: 975aa    MW: 104015 Da    PI: 8.207
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.54.9e-07206224120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG H+C  lCH+GpCppCp+
  Vocar.0005s0190.1.p 206 CG-HTCLLLCHPGPCPPCPL 224
                          **.***************95 PP
2zf-NF-X116.51.9e-05258275119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG H+C   CH+G+C +C+
  Vocar.0005s0190.1.p 258 CG-HRCPDVCHPGDCAKCR 275
                          **.***************6 PP
3zf-NF-X122.23e-07310328119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+HkC+k CH+G C++Cp
  Vocar.0005s0190.1.p 310 CGNHKCEKVCHTGACGSCP 328
                          ******************8 PP
4zf-NF-X123.51.2e-07444463120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+HkC ++CH GpC pCp+
  Vocar.0005s0190.1.p 444 CGNHKCPAPCHSGPCRPCPL 463
                          ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359094160IPR019786Zinc finger, PHD-type, conserved site
PfamPF014223.7E-4206223IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6E-4206224IPR000967Zinc finger, NF-X1-type
CDDcd060086.02E-8248295No hitNo description
PfamPF014220.0088258275IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017258276IPR000967Zinc finger, NF-X1-type
CDDcd060081.09E-9300349No hitNo description
PfamPF014221.0E-5310328IPR000967Zinc finger, NF-X1-type
SMARTSM004383.4E-4310329IPR000967Zinc finger, NF-X1-type
CDDcd060084.01E-9354403No hitNo description
PfamPF014220.0031364383IPR000967Zinc finger, NF-X1-type
SMARTSM0043812364392IPR000967Zinc finger, NF-X1-type
PfamPF014220.0082417434IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019417436IPR000967Zinc finger, NF-X1-type
CDDcd060083.74E-13434482No hitNo description
PfamPF014222.6E-5444462IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4E-4444463IPR000967Zinc finger, NF-X1-type
SMARTSM0043812501522IPR000967Zinc finger, NF-X1-type
PfamPF014222.2511520IPR000967Zinc finger, NF-X1-type
PfamPF014220.081668678IPR000967Zinc finger, NF-X1-type
SMARTSM0043862668711IPR000967Zinc finger, NF-X1-type
CDDcd060086.14E-6709756No hitNo description
PfamPF014222.4713735IPR000967Zinc finger, NF-X1-type
SMARTSM004381.5719737IPR000967Zinc finger, NF-X1-type
SMARTSM004383.5783804IPR000967Zinc finger, NF-X1-type
PfamPF014220.25784797IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MPRVGGNGPF RRGPVLSNNS SDDEAISGSA RPLAAAKQAW RGSGTQSDQA MSALFEQYMR  60
VGNELGDDIG KDQIFEQGLS RIRDHLTNVD SSCCLICLNH IEPTEAVWHC EQGCYTVLHL  120
VCIQDWARSQ VDAARAKAAA RSLQDPTATV HAFDWGCPKC RSTYPAADVP RQYKCFCGKV  180
TNPEFDPWVT PHSCGEICRR SLAGGCGHTC LLLCHPGPCP PCPLIVDASC YCGSKKLKQR  240
CGHHEYSCKD VCGSKLDCGH RCPDVCHPGD CAKCRVMGEF PCRCGAEVRQ LQCGDRNYQC  300
ARVCGKPLAC GNHKCEKVCH TGACGSCPFS GVRTCPCGKQ TYEGMSCTDK VPSCGETCGK  360
LLPCGIHRCA DRCHQGECTA QCRGPALKTC RCGKSQKEVL CFQEFTCERR CLEMRACGRH  420
PCKRRCCDGN CPPCEEVCGR RLKCGNHKCP APCHSGPCRP CPLTVTVTCA CGATSCTLPC  480
GAESKAEAPH CFKPCSVPRI CRHGPQLPAH RCHYGPCPPC ALPCATPLTC GHSCAANTCH  540
DPPPPPVPDF KPPPPPSKSA VAAATAMAGA DGIGGSAVTD REQQQQQRRK RGALPDSASS  600
APAVQQPTHE AAQILAAIAA SGELPSACPP CRQPMQEICV GGHGSVAMPC SERRPYRCNA  660
PCGRPLQCGN HRCPLPCHAV LDGATNGAAA AAAASGGGDP RVPQTCRPCD RPCGLTRGCS  720
HPCPRRCHQG QCPRCELQSR MACLCGKTML QLPCHQLTEA QAKNQINSLL SCGKPCHRQL  780
AFCTHPCKAL CHSGPCPNPE GCSAEVSVRC ACPNKRRAKW KCSEVQDALE RAGQPRTYDD  840
AQAPRLLLCD AECELLKAKV ATSAQVAKGT ANGPAPSTSM TTSRSMESLS DGAGGAAATT  900
GKASKTRLTR AEREALAAKK EAERLRQQRL TAIMRGVMMG IVVALGLLLA WGIKALLSYL  960
DEMMQSRWAL DRVQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002954040.10.0hypothetical protein VOLCADRAFT_82592
TrEMBLD8U5W30.0D8U5W3_VOLCA; Uncharacterized protein
STRINGXP_002954040.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-127sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors