PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0123.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family HSF
Protein Properties Length: 1241aa    MW: 121974 Da    PI: 5.0208
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34221132102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw  +g+sfvv++++efa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F++ +k
  Vocar.0005s0123.1.p  22 FLRKTYDLVDDPTTNHVISWGPQGKSFVVWKPSEFAANLLPQYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFQQYNK 102
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell +i+r+k 
  Vocar.0005s0123.1.p 103 ELLLTIHRRKP 113
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3814105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5718111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3218111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3022111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1241 aa     Download sequence    Send to blast
MTGEGHSARG QQGGNQGQPA PFLRKTYDLV DDPTTNHVIS WGPQGKSFVV WKPSEFAANL  60
LPQYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEHFQQY NKELLLTIHR RKPASSNAVA  120
ASVGTSAGTG IAGGSSSSAQ AAQPQPGPCA LPTHPFQAAA QIPDPSSAPS TVTAPPGIAA  180
SAPVPIPIVN TLHSHGSSGL PAVAAPAGAP FSLSPPFPLD LGIAATLPLF TSPSPSGSAA  240
AVSGAAAFGS GPGGLQPLPV LSGQQQQQQQ GPPLSVAPSP GSAFTRPLPP PGPPPVPGIK  300
TEISQPRGPQ QLGPLLPPSA GGNGLSRLEQ LVGEYLKPGQ QMLVALSQQS SLPNQAALGR  360
SVADGIVADG TAEGSGRSNS LGGIQVGQPC GGEVTQQQQQ QQQPPSQPLQ SSNSHSTNTA  420
PSASSTEHND PMVADSEYGN GNGSTAATGG GTVSGGGLGS GSGGMSKSNN KRSRCDLEPS  480
GVEAVAVALL KGQGPQQSAP TSLFATNPPG AGGASGGGGG GGSSSGLTNY DAAGNLLPAG  540
ITRPLPQHLG GTTAALLSEM AGQLGRISAL AREVEGLKEE NTALKRSMEA LTEAYGNVRL  600
LGGDGGGCGG GSGPVGATPS GPAGDVTGDG LAGGDGVGFL PYDGDGVADG GAAASGASEG  660
AAGGSTGSGP LEGTSAAGAA GTGAAAAGAA PTAGPVANVM PLSQAVEVQQ KRIWDQKLRH  720
DDLEKQLQAQ REVSAVQAAK TAALEAALAA NTAKAVHDAA MFGRVLEERV TAQSEVVRDR  780
LEAQERANKV AQDVNQRLEA RVAELEAQLS ALGQDTGGGA ALGEGAGEGA CLGQGCPLSL  840
SQSPPPVPSN LPVNNCNNNN NNNNLNPCNR QPPLDWPDAA ALGVRAIHHQ GAGAQVPAHG  900
SVAIADGSGD LAAAPGVPDG ELGAPGLVGS SPPPPAPQQQ RLMLAFSPEA ELYAKSIEDR  960
LWGTVEQIVN SADSPADGAR LVLQVAKARH MAYAAAAAAA AAAALSSSSG GGGASGCGTA  1020
AAAAVDAAAS DANRQNSGGS GASDSNRPGG SGSLAGEGGP DAAGAGGSIP GQATVAAMAA  1080
FLASPLGSVG RATRAGPEVA AAKAGMFHDP YGTGANDGGG HYNGTQAFSE HNAVRWEAAE  1140
GANSREGSGS CPPPPVPPPV PLPMPPSVGC GGSGVVVNQH ASEAAAAAVV VSRAAVATTT  1200
GTATVAAAAA AGEVVDGEHS GVAAPQWNEH ADSDHMDMGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-21191118110Heat shock factor protein 1
5hdn_A8e-21191118110Heat shock factor protein 1
5hdn_B8e-21191118110Heat shock factor protein 1
5hdn_C8e-21191118110Heat shock factor protein 1
5hdn_D8e-21191118110Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951765.10.0hypothetical protein VOLCADRAFT_105190
TrEMBLD8TZ520.0D8TZ52_VOLCA; Uncharacterized protein
STRINGXP_002951765.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-43heat shock transcription factor B4