PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0004s0521.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

G2-like

Protein Properties

Length: 1423aa MW: 138435 Da PI: 6.4542

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0004s0521.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.5	1.1e-26	954	1007	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W++eLH+rF++a+ qL G+++A+Pktil+lm+v+gLt+e+v+SHLQkYR+ Vocar.0004s0521.2.p 954 KPRINWSQELHARFLNAMFQL-GIKNAVPKTILQLMNVEGLTRENVASHLQKYRI 1007 79*****************.******************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.423	951	1010	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-17	952	1011	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-26	952	1011	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-22	954	1007	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1423 aa Download sequence Send to blast
MVAHSQAEGS TGTSAPPGLG PPPRGPDRAS SAFTAYVRPY PAAGTSSILI HGGGGGSGSG 60 GSTDVAASPY TESMAAATAT AAAAGAGAAA SNGGGSCTLE HFPVAPRHRN HHYSGVQSQG 120 GSYSHSYSHT AASSHRKDLG SSEPAPSLHL PSHQQQQQLR QMQQLLSSHS LDSRGQTHTH 180 RQAHLLGKSA HMHFHMDGAY STHKRPHSHA ERYGQSSAGN DYNHHRHHQP HHHPSDLDPM 240 NRLVELATAA AAAAAAGSGS GSGSASPSNL AIKSEDCDPM RGLGGDTDLD PETDQANGHL 300 EDGDEGMSEG GGADGDNENG LDPEDDTKSG VLDPSYAASG RAVEREPPVA VGEGGGLAPA 360 PAAGNAQQLA AAAAMLELAQ AGGGGARHGA GIAAAVNGSP IGVLAAAAAA ASAGGPPAAT 420 PLLQLLAAQQ QQQQQGQTLS ELISVLSGSS AAAGGVSGGI SGAAAAVLQH LATQEQLQLV 480 LQQQQQQQQQ VALLLQLVQA GSGGGGGLGT GLGGLGGLLG FAGLGGGGGF GAGQGSGGVL 540 GQVLGLLGPQ ALAGLGGQGG LQGGHQGILG ALLGGGGGVS GATAAAAVAA QQQLQHLQLQ 600 QQQQQSQQQQ QQQQQQQTAT IPTALPHANG VAVSVDPQGH GQSLQTRPST SSAPATSGPL 660 PQQQQQQQVP PVRTATTAAT QRTCSPAPPQ PPPPSQQQQQ QQPSQFQNLL QQQQQDSQLR 720 KASHQHPQQQ QQQQREQQHL QGACSPSDAD QGESKAPGSP PETTAATAAA ATMMATTAMA 780 PSATPPQQSY NQFADIANAQ LEEATEEGDE DTEEREDDRD SDTFDGDGGD GGDGLEGFLD 840 ERMVVVAAGE AHTDKACQVT LVPGSPLRFP GSHPPPGRGG AAVGAVAAVG SKRKAAAMMT 900 GGNSSAACTS NGHGSGGSGG FGASGGSGGG GGGEENNGSA AGEGGDGTCK APKKPRINWS 960 QELHARFLNA MFQLGIKNAV PKTILQLMNV EGLTRENVAS HLQKYRILLK RHAQLPANAP 1020 LNPDNLRKLE VVQQAVQQSM QQSMSMQAGS GGQAALINVA VGGGIGGTLS YQDLISQLSA 1080 MTTAHGPAPP AITAPATAAV AAQRAAAAAA VAAPPPAAAV AAAAPPPPAA PSAAVVPQAA 1140 ALQGLQRAAV AAVSGGAPTG GAVPAAAAAA AGSGAAAVAA PSSVIGVLAA ASNSVPIPLC 1200 SVPLGGLSVG PGLNAVLGLS GLNNLGAGGG GAGLNGLGPL AAAAAAAGLN GIGGLQGLTA 1260 PLAAAGLTAG LGGLTAAATP AGLAGLSGLG VGGGTGGLNG LGPAAAIGLV GHTNPLATLI 1320 SSAAAGGGGA GTPVAAVSGS QPQVATSTAA TATATAAQPH GRHQQQQQQQ SQHLTPGQSA 1380 AAAFAAVAAA AAAQSAQSPS GPAPGSQAAA QISRQATSAS VS*

Sequence ? help Back to Top

Protein Sequence Length: 1423 aa Download sequence Send to blast

MVAHSQAEGS TGTSAPPGLG PPPRGPDRAS SAFTAYVRPY PAAGTSSILI HGGGGGSGSG  60
GSTDVAASPY TESMAAATAT AAAAGAGAAA SNGGGSCTLE HFPVAPRHRN HHYSGVQSQG  120
GSYSHSYSHT AASSHRKDLG SSEPAPSLHL PSHQQQQQLR QMQQLLSSHS LDSRGQTHTH  180
RQAHLLGKSA HMHFHMDGAY STHKRPHSHA ERYGQSSAGN DYNHHRHHQP HHHPSDLDPM  240
NRLVELATAA AAAAAAGSGS GSGSASPSNL AIKSEDCDPM RGLGGDTDLD PETDQANGHL  300
EDGDEGMSEG GGADGDNENG LDPEDDTKSG VLDPSYAASG RAVEREPPVA VGEGGGLAPA  360
PAAGNAQQLA AAAAMLELAQ AGGGGARHGA GIAAAVNGSP IGVLAAAAAA ASAGGPPAAT  420
PLLQLLAAQQ QQQQQGQTLS ELISVLSGSS AAAGGVSGGI SGAAAAVLQH LATQEQLQLV  480
LQQQQQQQQQ VALLLQLVQA GSGGGGGLGT GLGGLGGLLG FAGLGGGGGF GAGQGSGGVL  540
GQVLGLLGPQ ALAGLGGQGG LQGGHQGILG ALLGGGGGVS GATAAAAVAA QQQLQHLQLQ  600
QQQQQSQQQQ QQQQQQQTAT IPTALPHANG VAVSVDPQGH GQSLQTRPST SSAPATSGPL  660
PQQQQQQQVP PVRTATTAAT QRTCSPAPPQ PPPPSQQQQQ QQPSQFQNLL QQQQQDSQLR  720
KASHQHPQQQ QQQQREQQHL QGACSPSDAD QGESKAPGSP PETTAATAAA ATMMATTAMA  780
PSATPPQQSY NQFADIANAQ LEEATEEGDE DTEEREDDRD SDTFDGDGGD GGDGLEGFLD  840
ERMVVVAAGE AHTDKACQVT LVPGSPLRFP GSHPPPGRGG AAVGAVAAVG SKRKAAAMMT  900
GGNSSAACTS NGHGSGGSGG FGASGGSGGG GGGEENNGSA AGEGGDGTCK APKKPRINWS  960
QELHARFLNA MFQLGIKNAV PKTILQLMNV EGLTRENVAS HLQKYRILLK RHAQLPANAP  1020
LNPDNLRKLE VVQQAVQQSM QQSMSMQAGS GGQAALINVA VGGGIGGTLS YQDLISQLSA  1080
MTTAHGPAPP AITAPATAAV AAQRAAAAAA VAAPPPAAAV AAAAPPPPAA PSAAVVPQAA  1140
ALQGLQRAAV AAVSGGAPTG GAVPAAAAAA AGSGAAAVAA PSSVIGVLAA ASNSVPIPLC  1200
SVPLGGLSVG PGLNAVLGLS GLNNLGAGGG GAGLNGLGPL AAAAAAAGLN GIGGLQGLTA  1260
PLAAAGLTAG LGGLTAAATP AGLAGLSGLG VGGGTGGLNG LGPAAAIGLV GHTNPLATLI  1320
SSAAAGGGGA GTPVAAVSGS QPQVATSTAA TATATAAQPH GRHQQQQQQQ SQHLTPGQSA  1380
AAAFAAVAAA AAAQSAQSPS GPAPGSQAAA QISRQATSAS VS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-22	954	1010	1	57	Transcription factor LUX

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB363968	1e-103	AB363968.1 Chlamydomonas reinhardtii ROC75 mRNA for RHYTHM OF CHLOROPLAST 75, complete cds, variant 1.
GenBank	AB363969	1e-103	AB363969.1 Chlamydomonas reinhardtii ROC75 mRNA for RHYTHM OF CHLOROPLAST 75, complete cds, variant 2.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	6e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Vocar.0004s0521.2.p