PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0004s0316.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB

Protein Properties

Length: 1340aa MW: 138870 Da PI: 9.6486

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0004s0316.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	5	50	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+ Ed ll ++v++ G+++W +Ia+ + ++++kqc+ rw ++l Vocar.0004s0316.1.p 5 TAWTESEDALLRQLVEEKGPKNWGLIAAQIK-TKSGKQCRRRWTNFL 50 68**************************9.**********996 PP
2	Myb_DNA-binding	49.2	1.3e-15	57	97	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g WT++Ed +l +++k++G++ W+ Ia+++g gRt++ +k+r+ Vocar.0004s0316.1.p 57 GGWTPQEDNILMEGHKMHGNK-WTEIAKMVG-GRTDNAVKNRF 97 67*****************.*****.********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.303	1	54	IPR017930	Myb domain
SMART	SM00717	1.4E-14	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.74E-27	4	97	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-14	4	49	IPR001005	SANT/Myb domain
CDD	cd00167	5.70E-14	6	50	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.3E-19	6	55	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-14	55	103	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.537	55	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	56	102	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-15	57	97	IPR001005	SANT/Myb domain
CDD	cd00167	3.42E-11	59	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1340 aa Download sequence Send to blast
MALKTAWTES EDALLRQLVE EKGPKNWGLI AAQIKTKSGK QCRRRWTNFL NADLKTGGWT 60 PQEDNILMEG HKMHGNKWTE IAKMVGGRTD NAVKNRFAAI SKRFRAQSSL KPDPSTCGGS 120 RKRCRPENTG EDAAPGAPAA RDDLHDLDCG DRAARRAAVV ASSSVVAAAF AAAFPGSPQT 180 PQRRHSAAAG ATTTGASFSH CFNAASGGGA TAAHLARPRS VSETYLHMPS SQVSAAAAAA 240 ATTTCAQVHS RWPALLHTPT RHVSCAEVGV HRSPTPSCGL DGPQQLQRHP TPQVAPRTLS 300 QPQLLQSASF AVDLGAQGRL APSLAQTPSW RQPQLQHHYQ QQSQPQLPPP PPQHPLPCSS 360 PTYSHSFPQP HPHQHTHANP NPRAHAPNQF SLPPSRMLPP PGCAQQQLQL QPTTGNGAPW 420 PSPVFSPPPG GSGRDVITAN GGGGGGGGLR GTSGASAVTG RLGVWEVCSG GGGGSGGVSH 480 SEATPRSVRP GWPYTPSSAS PLPTAPGSRA DAARNQGLLP RLLAADATLP ITPGPATVSS 540 CSSYGGCSGG AAIGLAHPEL PLRRSFPPPP PPPPQQQQQQ EIQPPQQHVL QMRTAELRPE 600 QQPQQQHLVM QGPEQQPQLS HRLQPPRQLA AAAAMQDWPM DGTMPRQGSV LQYGKKSEKV 660 HVGGGEPDGG DTSRSLTSRW APPKRLALSL FIPNDPREVE PSDLRHPPFA AATVPMQPPS 720 SSSPAPLRKA ANGSPCHMDS QTYHPPLQVV AEANKLADIA AAEAAVVTTV RDQGSSPGTG 780 AAGVAGSSSK WPWAPLKWLS LNTGVPDGRV STDSCCNQPP ASSTVAAAAA AAAAPAAAPS 840 LPWGSMATTP LGREPRLPSP SGARGSKQTE GVLSGAAGGQ SASPRDAAAA AVSSRVSVRG 900 GGGAGGGMGS PRHAWLPPKR LPLRIHIPED PGTQDRGNER QSPSRRQPPP PQTAPQSPSR 960 SPPPSPRPSP SPSAARRQAL TESPFGVICP EGRSLLEDVF TPCELAFAHD LHDTTLPPWP 1020 RRRPPPLWAG SQLKYGSHTG AAADKQADGH EVDVEEKYGM KSSGYGSGQD RKADEMNWRD 1080 GSEVVLVSSP SGAGRHVLSP SHFFEPPGSI TSAATATTLP ATTSTQAAAA TKHSVSGTAA 1140 AAAATAAATA TAAATATRRH RSGDGSSGQQ RCEIRSPLLP RRREEHFPLS PESTPAEYRE 1200 VLPWFSYDDA GGGGVNVDDD SGNGQRVPTP TGTSARSSTA MPRRGGGGGG GAAAAKATPT 1260 RPTVDSIGDG DSGDGGDGGA GQSMCYSEAL GDHPSSSPAG ALLCMFATGL TPKALGRSSR 1320 SPRLWETSCL GSTFSCSPR*

Sequence ? help Back to Top

Protein Sequence Length: 1340 aa Download sequence Send to blast

MALKTAWTES EDALLRQLVE EKGPKNWGLI AAQIKTKSGK QCRRRWTNFL NADLKTGGWT  60
PQEDNILMEG HKMHGNKWTE IAKMVGGRTD NAVKNRFAAI SKRFRAQSSL KPDPSTCGGS  120
RKRCRPENTG EDAAPGAPAA RDDLHDLDCG DRAARRAAVV ASSSVVAAAF AAAFPGSPQT  180
PQRRHSAAAG ATTTGASFSH CFNAASGGGA TAAHLARPRS VSETYLHMPS SQVSAAAAAA  240
ATTTCAQVHS RWPALLHTPT RHVSCAEVGV HRSPTPSCGL DGPQQLQRHP TPQVAPRTLS  300
QPQLLQSASF AVDLGAQGRL APSLAQTPSW RQPQLQHHYQ QQSQPQLPPP PPQHPLPCSS  360
PTYSHSFPQP HPHQHTHANP NPRAHAPNQF SLPPSRMLPP PGCAQQQLQL QPTTGNGAPW  420
PSPVFSPPPG GSGRDVITAN GGGGGGGGLR GTSGASAVTG RLGVWEVCSG GGGGSGGVSH  480
SEATPRSVRP GWPYTPSSAS PLPTAPGSRA DAARNQGLLP RLLAADATLP ITPGPATVSS  540
CSSYGGCSGG AAIGLAHPEL PLRRSFPPPP PPPPQQQQQQ EIQPPQQHVL QMRTAELRPE  600
QQPQQQHLVM QGPEQQPQLS HRLQPPRQLA AAAAMQDWPM DGTMPRQGSV LQYGKKSEKV  660
HVGGGEPDGG DTSRSLTSRW APPKRLALSL FIPNDPREVE PSDLRHPPFA AATVPMQPPS  720
SSSPAPLRKA ANGSPCHMDS QTYHPPLQVV AEANKLADIA AAEAAVVTTV RDQGSSPGTG  780
AAGVAGSSSK WPWAPLKWLS LNTGVPDGRV STDSCCNQPP ASSTVAAAAA AAAAPAAAPS  840
LPWGSMATTP LGREPRLPSP SGARGSKQTE GVLSGAAGGQ SASPRDAAAA AVSSRVSVRG  900
GGGAGGGMGS PRHAWLPPKR LPLRIHIPED PGTQDRGNER QSPSRRQPPP PQTAPQSPSR  960
SPPPSPRPSP SPSAARRQAL TESPFGVICP EGRSLLEDVF TPCELAFAHD LHDTTLPPWP  1020
RRRPPPLWAG SQLKYGSHTG AAADKQADGH EVDVEEKYGM KSSGYGSGQD RKADEMNWRD  1080
GSEVVLVSSP SGAGRHVLSP SHFFEPPGSI TSAATATTLP ATTSTQAAAA TKHSVSGTAA  1140
AAAATAAATA TAAATATRRH RSGDGSSGQQ RCEIRSPLLP RRREEHFPLS PESTPAEYRE  1200
VLPWFSYDDA GGGGVNVDDD SGNGQRVPTP TGTSARSSTA MPRRGGGGGG GAAAAKATPT  1260
RPTVDSIGDG DSGDGGDGGA GQSMCYSEAL GDHPSSSPAG ALLCMFATGL TPKALGRSSR  1320
SPRLWETSCL GSTFSCSPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-29	3	103	6	106	B-MYB

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.2	2e-33	MYB family protein

Link Out ? help Back to Top
Phytozome	Vocar.0004s0316.1.p