PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0004s0114.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bHLH
Protein Properties Length: 557aa    MW: 57352.2 Da    PI: 10.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0004s0114.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11141186454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h ++E+rRR riN+++e Lr+l+P+a     ++ + a  Le++++YI  L
  Vocar.0004s0114.1.p 141 RHQAAEQRRRTRINERLELLRKLVPHA-----ERANTACFLEEVIKYIEAL 186
                          599***********************9.....8***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.351137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12140196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-9141186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-8142188No hitNo description
SMARTSM003536.6E-5143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MQPTSLTGRQ QQLGLLMGRA QPDVLDAARV AALLNGQSNS FSLQSGLGGV GLGSGVLAGL  60
GPSSGGLNLS LGSLSQPSQQ APQTSQLALP DHLALLSQFP HALLPPQQYN PTDRDLQLAG  120
LRNVGKTRSS DSRSSSAYAS RHQAAEQRRR TRINERLELL RKLVPHAERA NTACFLEEVI  180
KYIEALKRRT MELETMLEAA TGKPVAKSLG TQGVPSSGAC GSSALEPVGA DSQAPSPRQI  240
TPATQQLSCP HPPSANGTAA VSASTLAPPL PPSQQQQPQQ QSAVSEALGT SSQAGAAPVT  300
TQHQQSPQLQ LASAVSSQLA HLLPGGGGPQ GQQNGLGALF PHSGGALSLA GGSLSLGGNG  360
NGGAANTLSL AQLTAGLQAH QHLSGAAAAA SLLPHSHSQL TSSASLTQQH LNDLQTMQVM  420
HSLHQHQQQQ QQQQARAAAV AAAPGGHLSL HAAHTSSHHS AGHPPPFLPT NNKAFLHFNE  480
DLFGGLKPEQ LVPSRSLLGA AASTTPSTSM QLTSAHLPTD SNTLAQAETR RKTLSGSPVS  540
SEESGVPLKK RKILML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1529551RRKTLSGSPVSSEESGVPLKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002949685.11e-123hypothetical protein VOLCADRAFT_120807
TrEMBLD8TTQ61e-122D8TTQ6_VOLCA; Uncharacterized protein
STRINGXP_002949685.11e-123(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP566588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-10BES1-interacting Myc-like protein 2