PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0003s0435.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | SBP | ||||||||
Protein Properties | Length: 2020aa MW: 203690 Da PI: 6.8562 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 80.4 | 2.6e-25 | 74 | 152 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----....---S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhne....rrrk 75 +Cqv+gC+ l++ k y++r+k+Ce h kap++ ++g+ r CqqC+rfhels f+ +kr+Cr +L++ + rrrk Vocar.0003s0435.1.p 74 VCQVQGCNRSLQNSKLYYQRFKLCEDHLKAPAISIDGVLSRLCQQCGRFHELSAFEGKKRTCRAQLDRIRKakelRRRK 152 6***************************************************************998643211225554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.0E-26 | 69 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.187 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-22 | 74 | 146 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-26 | 75 | 152 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2020 aa Download sequence Send to blast |
MFRNDAEPST HPEWDPDAYT WDGVALTATR NPQQGSRSRT AVDASPYAEY LDADVPALMS 60 RPPVGVLSKA QRLVCQVQGC NRSLQNSKLY YQRFKLCEDH LKAPAISIDG VLSRLCQQCG 120 RFHELSAFEG KKRTCRAQLD RIRKAKELRR RKAGGSGGSE SPDPADADVR ESDADMKAEG 180 TDTVAMDAST AATRRRDANR GGGGRGSGSG GTSLNSRSSE LTSNGSGGGT GGGGGGGGRG 240 ATAAAAAATV TAGETVSGGR DGGIGSCSRG AKARSSQGVV DVWSQRDEAA AAATDVGVGD 300 GCGNVSDGSV LGAAAAQGMV VEQPAGHGLM APMPVLAVPY SHDHYHNHHY PHNYDHHHQQ 360 QQHDVFPSAV GRYHNGSGGA AAATESGGRS ANERGATNVD AAAGAAATAG STGSQIASKA 420 TGASVGADQR LAKQQQLLQQ LESVRQRKDT QKQQLQLLRS ELGLQPGGYG DGKGDGGSWL 480 PVASGRSTSW VGMTQHCGGT SSDPRVLGEQ LLPGAAPAAP FGPPRFLSSS ASSILASLEP 540 MARLARGSPH VGFGQPPQSY WSTGMGMEGG ADAMPRTAEH GSTVSTAMAA AAAAGFLGAP 600 GGGRAAAATH ARAAHGLTFG PGATTAIGVG GGGGADTSAR AGGLGAVPGG APILVGSSGG 660 GGGAGVEGGN VLGSGRPGTQ FYGSHYRDHQ LGAGVPSQSV VGLSGGEGGG YGRWLGDGNY 720 LPGPKQLQYQ DRKQSQQGQP DINTLRRQMQ TGGAAGGLLH AATTRPECTT LASEGELQGL 780 LEELASTAFT AIDKCGMAAL QSSCGGGRGG GAMTVGELAV AVPPEAAATA MMPGGIAFPG 840 EAGPRGATTM TGTATVGLAG TYGTDMMAKG HAMADDVEWA AVAAALESGS QVRLNRTTNT 900 ANTVQQAQQQ QQQLAHQLQS IESWGGPSAA ALAAGSGPDQ AHPGLQLFGD RNAGGGGSGG 960 SGGSGGGPPY IARDHMTRVT LKMMNCLPDE LPPNLGANLQ RWVSNRSAAE VLQACMRPGC 1020 LELLVDVVHV RSAHELAAAL LAEGRAEDAW TALKRVITHK LAADNEVVLE VCNLVLSATP 1080 GSPGGGVRIR TWEEAAEAFA VADGSASVVT HASAAVGPAG SSETAAMMTT TAAMGKEAAR 1140 SGTTDLAAAV IAAGMKGGPR GPSAVQAPAT AAPVPPLDSK RQSSQPVILD SSLVAVRSAT 1200 ALTFTLYGKG LSDDDVDILG RMSGQNLQIT TRKLLTTTPT TARTATAAAE HVSRIAVLVQ 1260 PVRQGGMLIL EPRRGRLLGG WWPLVVVPEP EVVGELNAMA QEVAVAANEA EAETAQLRSA 1320 GSMYGSTPGW LRDFLVDLGQ VLDWVGWKPL KESEGDPPSA PFSPVSGSCS GEVWGSGVAD 1380 SPTPTAMGVS DGAVVAGRTP GVGCADTVAA LPGFRAEAAG PQPIENHAFT AGTAALQPNR 1440 VLQAAAVHAP LAIGAAALMV PRRRGPMDRA PTAAAGASVE TYNLAGGDSG KQVQSPLYGV 1500 SHGSVSATPD GSWAVSYGSD MTAGGSRSVG EGVGAAGGGD GGCRLGSGAG ENSDEEDRNG 1560 GSAATARALA ALRDADAKLE LRLSFKACRL LSFCVVRGLV HTASLLWRLL QVQGMSPDSI 1620 HDHALYNGAG LLLCAVQSRS GPMVEELLNR DTDGSWAALH ALRLGPSGLS PLHVAATLPG 1680 GYDVGAVLLE RIRGGAQRWF LLRGACGGPT PAQLAARCGN DRLNTLAVEL VQRDVAAAAA 1740 AAAAAAAAAA VGSGVNANSG LGAGDGNESA GGRSHAGQRL QPAALAAERG FTDTRAWSSS 1800 WEQQVCHRQP YHYHQQVLPP PLDNQQQHHH RPDRGQVRSL GNLMEAGMPG RFGQGIIGAQ 1860 LLEAIAELGL LWIGPDTAMV ATDEAPVSAA AAAPQLEADV RYPEGRGSGG SGRGCGSGSG 1920 GGSSDSGGSD SGSSSDSGNG GSSVSDAGSG GGSGGSLVRQ RRPGALAPAA RPSDAVQPQA 1980 GGGADSDRSS GGFRRLKDLM KGFLYGSSGN GKAQSSQTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-15 | 74 | 152 | 10 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 151 | KKRTCRAQLDRIRKAKELRRRK |
2 | 145 | 151 | KELRRRK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-18 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0003s0435.1.p |