PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0003s0219.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family E2F/DP
Protein Properties Length: 747aa    MW: 81509.4 Da    PI: 9.1312
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0003s0219.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.8e-27154232371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +k+Lr++++k   ++ek+e+ g++t+neva+eLvse             d+kn+rRR+YD++NVL+a+++i+k ek+ei wkg
  Vocar.0003s0219.1.p 154 SKGLRHFSMK---VCEKVEAkGRTTYNEVADELVSEmskmeaankngqyDEKNIRRRVYDAINVLMAMDIIQK-EKKEIMWKG 232
                          69********...*******9****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-42150235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.4E-33152232IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-24154232IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-20155233IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.66E-36238338IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-46239403IPR014889Transcription factor DP, C-terminal
PfamPF087814.0E-26241348IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.28E-30241353No hitNo description
SuperFamilySSF1036574.18E-5419437No hitNo description
SuperFamilySSF1036574.18E-5474574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MSEQQQQQQQ QRLERPGQAQ VQDPLGTQDR AHFVQELHEL GLLEFAEEVN FSRLTEAPGD  60
VGLSSASRPG AVGHNNPPPQ PTQPNDIHQC HLKNQMSDVA TAHAIQVLHL AKVSLHQLVN  120
SYNLRTAGSG GTDGSSKRRK TSRGADVSSS RSGSKGLRHF SMKVCEKVEA KGRTTYNEVA  180
DELVSEMSKM EAANKNGQYD EKNIRRRVYD AINVLMAMDI IQKEKKEIMW KGFPRLGNHS  240
LEKLKADRLA RIKEVEQKQL YLQDMIEQQK ALKKLLERSA ARGNAATGTQ LFLPFILVQA  300
KPDATVEVKI SEDMMDVQFD FYSSPFQIHD DSHVLKKMVE HQARQQQQQV QQPPFTNPLA  360
AGGLVLHWQP PNGVAAGLQG LSPMPDPALA HLAVAAAQAP GNPLAYNYPT AAAAAAAYYH  420
QQHQLLQQQQ QQQQGQQQQK QPPAQAAAVG QQQGQGHQQQ GQTGIQVPSS QQQKQPQQKQ  480
QHLQQQQQQQ QHLQQQHLQQ QHLQEHQEQQ HQEQHQQSQQ QQQQHHHQGS HHPAAQQQQA  540
QQQLQQQHHH HHHLQQQQQQ FQTLQALQQQ IQHAHASLPG LALPPLGPPL ALPKGSGPPS  600
RLPPPYGLAH SGSGPPSQHP PVVSQLVGQL TASLPSGSGS LLPPLSFGGI GAQSQHPLAA  660
MAQLPPPLPP PGQLLTMAHM PPALAAALAP PQPPAMRQGS MPPPPPPQQQ TGGVSQPASG  720
SEAPLQHAGI GQLGGPAPST AFPLVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-301552341090PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8983670.0FJ898367.1 Volvox carteri f. nagariensis transcription factor DP1 (DP1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001700867.11e-156DP1 transcription factor
TrEMBLA0A150H2I91e-172A0A150H2I9_GONPE; DP1 protein
STRINGEDP071211e-156(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-68Transcription factor DP