PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0003s0172.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1815aa MW: 185427 Da PI: 6.7201

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0003s0172.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	78.2	1.2e-24	96	171	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+v gC a l+ +k+y+ r +vCe h +a++++v+g+ rfCqqC++f + ef +k+sC L++hn+r r k Vocar.0003s0172.2.p 96 VCEVVGCGASLEGLKRYYVRMRVCERHLHAQAIVVNGVVSRFCQQCAKFQFVGEFAGNKKSCIATLERHNARHRAK 171 6***********************************************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-22	92	157	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.674	94	171	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-23	96	172	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-25	97	170	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1815 aa Download sequence Send to blast
MSGARVRRRV EEEARAEEAW ALQDYEWDPI ACVAHKKRIL ASGEAADVAP SPLAHSFPDG 60 ALSGHFFQPT PAENPKLSSL PVLESVDRND AEHATVCEVV GCGASLEGLK RYYVRMRVCE 120 RHLHAQAIVV NGVVSRFCQQ CAKFQFVGEF AGNKKSCIAT LERHNARHRA KVLARMQELN 180 DGESDSAQTG GRSSRAKAKT NSRRKGCKAA AAAVAAAASA STSVRAGSAS ASADRTERAN 240 SGTSGAATMD GFWMTSAVAA TQAAGHGRGS AANLVDQRAQ RSLSPGVPVL PSEVATPSKP 300 ASPHPPKGVW DGASGALEEL LLRPLVTTGG SGVVSTSERI ALPPPLVCGG GGPFITPQQQ 360 QLLLSLPKGA GVPSSWSQQQ YDVQVALAAV QNQVIMEGVS LGVHTPAMTQ AGHCMEVAPS 420 GMYGTGYRAN GAVPGAWNHP PCAVTARTDI HAPSGQPSFA AAAATAPAPG PAAAAAAAAS 480 GGSAPSPSSA PYTSGSDVSA GGKASQGTAR QALHAVGGGG ASSAGNGSHG FPAETTKSRG 540 SRQSEAEPCG STGRIAMNAA SPAYSANEGV SATRVSASGD AFGTAAGSGG AGDVIAPPQP 600 GDVAARISSI MQELCPLIEQ FKQEVAHGPM NPHDNVLTAA APSSGTGAGV AVAQGMGAAP 660 VAGSYTPGPS ESLAPVMDTV MAVMQQASQL AASLKPPSTV AKLPWTVTSG GPDTQRQLAA 720 SGSMVPEPPV LGGLQGFDQS QAHASSLAAP LPQLSQPPPQ QQQRPHPPLM PMPQLLQPGW 780 RPLASHPGVV VNEAAVQQAA CNVPTASSGP LSATVSFPAP PAPGPGALWT AAPAPATSLA 840 SSSAATSQPP AGHIIFSNYA GAAAAADTAI ERSAMGGASQ LLQQPHLPLT GAGFGNDPVP 900 QGAKDDDSSE DDEMFQQLLT LLQDEAGDAC TMQQQQQEEQ RGIASTVHQA VMAHQQTVQA 960 MPYGHAPMSP FYWPSVAAAA PPHPQAPSHP YPPPPLPPQL EPHPPMPSAP SWLAAPAVPR 1020 YVEEPDDVDP RELTRVSLKA MNVLPHELPN NLRANLRRWL KEARAEALQA TLRPGCLQLV 1080 VDVLRQPSPS QELSSALIPA NDADQAAADV FRVLGQRLRD TYVQVDRRVL QMRVGERPVV 1140 LSWEEAAEEG GLDDSKYPEL TGCNAAAVCA GSQATLQLTG RYLSQPRIKV FARLRGHDLP 1200 TTLLPPEAQP ATTASGDGGG DVSSLRLIVS VPPRTVGLMA VEVGVGHLLG DWWHVLVLPH 1260 GCEGAAEEIR RLQAATEAAV QQREDQGRRS ASAADGAAGD AAGVDAQAAC RASRRLVRDM 1320 ASVLEVFAAA AAADASAAAV AAMTRSSSSS GGGSATPDGA GGDAAPTGAN SPPSGARCPL 1380 PNCGSSHVSR SDASLTAISA ASWSSGGRTD TLMSTNAGST VGSFMTTSSA SAFMPAGMAP 1440 GQVHVPGLPV AQHTARHPAA AAAAGSPAAV TAATAAAAAA AAVLPIVLLP PPPSAVMRQA 1500 LIRAARLLRY AVARGMPYLT SLLLTAVNRL ARIQPEPQPQ PQLPIHQPQA QTVQVGSAAA 1560 AAPAPQPTSS GPSRLEVLAA AGVDLQELLR LAVLSGSAAT VDQLTGFAAR VLGSPLRLDL 1620 PQGPGGLSAL HLAALLSDGG ALACHLLATQ PWAAWQWLCL GWKPQLEAAS KGRDSQQPQP 1680 REGPPQGASP SLAAASVNTN GVVEAKKELV RGDEDEEASD EEDGEVGWHW TPLPPRPLSL 1740 TPGQLSVMLG NHVTVRKAVS ELMTTTNSGS TGVCVLRRGP AMTAALVTAL EAWGRTGVTL 1800 LQTLCAQLAQ QKLE*

Sequence ? help Back to Top

Protein Sequence Length: 1815 aa Download sequence Send to blast

MSGARVRRRV EEEARAEEAW ALQDYEWDPI ACVAHKKRIL ASGEAADVAP SPLAHSFPDG  60
ALSGHFFQPT PAENPKLSSL PVLESVDRND AEHATVCEVV GCGASLEGLK RYYVRMRVCE  120
RHLHAQAIVV NGVVSRFCQQ CAKFQFVGEF AGNKKSCIAT LERHNARHRA KVLARMQELN  180
DGESDSAQTG GRSSRAKAKT NSRRKGCKAA AAAVAAAASA STSVRAGSAS ASADRTERAN  240
SGTSGAATMD GFWMTSAVAA TQAAGHGRGS AANLVDQRAQ RSLSPGVPVL PSEVATPSKP  300
ASPHPPKGVW DGASGALEEL LLRPLVTTGG SGVVSTSERI ALPPPLVCGG GGPFITPQQQ  360
QLLLSLPKGA GVPSSWSQQQ YDVQVALAAV QNQVIMEGVS LGVHTPAMTQ AGHCMEVAPS  420
GMYGTGYRAN GAVPGAWNHP PCAVTARTDI HAPSGQPSFA AAAATAPAPG PAAAAAAAAS  480
GGSAPSPSSA PYTSGSDVSA GGKASQGTAR QALHAVGGGG ASSAGNGSHG FPAETTKSRG  540
SRQSEAEPCG STGRIAMNAA SPAYSANEGV SATRVSASGD AFGTAAGSGG AGDVIAPPQP  600
GDVAARISSI MQELCPLIEQ FKQEVAHGPM NPHDNVLTAA APSSGTGAGV AVAQGMGAAP  660
VAGSYTPGPS ESLAPVMDTV MAVMQQASQL AASLKPPSTV AKLPWTVTSG GPDTQRQLAA  720
SGSMVPEPPV LGGLQGFDQS QAHASSLAAP LPQLSQPPPQ QQQRPHPPLM PMPQLLQPGW  780
RPLASHPGVV VNEAAVQQAA CNVPTASSGP LSATVSFPAP PAPGPGALWT AAPAPATSLA  840
SSSAATSQPP AGHIIFSNYA GAAAAADTAI ERSAMGGASQ LLQQPHLPLT GAGFGNDPVP  900
QGAKDDDSSE DDEMFQQLLT LLQDEAGDAC TMQQQQQEEQ RGIASTVHQA VMAHQQTVQA  960
MPYGHAPMSP FYWPSVAAAA PPHPQAPSHP YPPPPLPPQL EPHPPMPSAP SWLAAPAVPR  1020
YVEEPDDVDP RELTRVSLKA MNVLPHELPN NLRANLRRWL KEARAEALQA TLRPGCLQLV  1080
VDVLRQPSPS QELSSALIPA NDADQAAADV FRVLGQRLRD TYVQVDRRVL QMRVGERPVV  1140
LSWEEAAEEG GLDDSKYPEL TGCNAAAVCA GSQATLQLTG RYLSQPRIKV FARLRGHDLP  1200
TTLLPPEAQP ATTASGDGGG DVSSLRLIVS VPPRTVGLMA VEVGVGHLLG DWWHVLVLPH  1260
GCEGAAEEIR RLQAATEAAV QQREDQGRRS ASAADGAAGD AAGVDAQAAC RASRRLVRDM  1320
ASVLEVFAAA AAADASAAAV AAMTRSSSSS GGGSATPDGA GGDAAPTGAN SPPSGARCPL  1380
PNCGSSHVSR SDASLTAISA ASWSSGGRTD TLMSTNAGST VGSFMTTSSA SAFMPAGMAP  1440
GQVHVPGLPV AQHTARHPAA AAAAGSPAAV TAATAAAAAA AAVLPIVLLP PPPSAVMRQA  1500
LIRAARLLRY AVARGMPYLT SLLLTAVNRL ARIQPEPQPQ PQLPIHQPQA QTVQVGSAAA  1560
AAPAPQPTSS GPSRLEVLAA AGVDLQELLR LAVLSGSAAT VDQLTGFAAR VLGSPLRLDL  1620
PQGPGGLSAL HLAALLSDGG ALACHLLATQ PWAAWQWLCL GWKPQLEAAS KGRDSQQPQP  1680
REGPPQGASP SLAAASVNTN GVVEAKKELV RGDEDEEASD EEDGEVGWHW TPLPPRPLSL  1740
TPGQLSVMLG NHVTVRKAVS ELMTTTNSGS TGVCVLRRGP AMTAALVTAL EAWGRTGVTL  1800
LQTLCAQLAQ QKLE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DJE7	1e-129	A0A2K3DJE7_CHLRE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-17	SBP family protein

Link Out ? help Back to Top
Phytozome	Vocar.0003s0172.2.p