PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0003s0074.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 641aa MW: 67264.5 Da PI: 6.7032

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0003s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.7e-14	47	106	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++++ r+ +NRe+Arr R+R++ae+ + + ++L+ eN++Lk +++l+ ++++++ + Vocar.0003s0074.1.p 47 ERRKALRRLRNRESARRVRARRLAEMSQMGTTLQSLQDENSTLKAHVNKLQSHIQSMTLK 106 7899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-11	44	109	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.7E-11	46	106	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.335	47	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-8	49	104	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-10	49	104	No hit	No description
PROSITE pattern	PS00036	0	53	67	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MEGSPSEVGP AHAVSEAASA EAHPDDHFSD DEQETELDAL QHLPPEERRK ALRRLRNRES 60 ARRVRARRLA EMSQMGTTLQ SLQDENSTLK AHVNKLQSHI QSMTLKVYEV TSKYEAAVAE 120 AAQLRAELNR YRRPSVPGDS SFLMGATAAT AAQTANGPNS APLNQLSPFI SPMEIGGGGL 180 GAQSCLSPSH VQLRSSSPME MQRQRQAIEE VVMLLKEHKR RHHPGQDRSG NSEIGSNGAG 240 AAGSGGACNV TNHQSPGSDT AMPGGSGTGG PLGDLAAGVL ATNNSTTANN NNGLMFNVGS 300 MSRFMGAAGT GAVGASGLGS GSGGRSSQSE VLTGSVQHSQ LMAQVQARMA ATAAAAAESA 360 GGVSSVCTTF LSNNVHNMGA QMQQQQLLQE QQPLQQQQSQ PQSQRLPLMT MLPQAQPLPQ 420 HIPQLDNSGP TATLSLPLPG QQQQQQVVLG QSNSHPLMQV QPLSSYQHQF SMVGQQQQHH 480 QHHRQQQQQQ QQQQTMACGQ QQGIDSGALY GTMSTLSLSA PFYSAASALP CTGNGGGLQM 540 TGHGSGANAL GSGMSGVGPV AAAPGFGGQH QQHHHRSASW ALDRGTAPCV TSAQNVVPMH 600 PTWQMNAGAG AGTVDGGLMM RPEDFAEDLM FLDDYVPQDL *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MEGSPSEVGP AHAVSEAASA EAHPDDHFSD DEQETELDAL QHLPPEERRK ALRRLRNRES  60
ARRVRARRLA EMSQMGTTLQ SLQDENSTLK AHVNKLQSHI QSMTLKVYEV TSKYEAAVAE  120
AAQLRAELNR YRRPSVPGDS SFLMGATAAT AAQTANGPNS APLNQLSPFI SPMEIGGGGL  180
GAQSCLSPSH VQLRSSSPME MQRQRQAIEE VVMLLKEHKR RHHPGQDRSG NSEIGSNGAG  240
AAGSGGACNV TNHQSPGSDT AMPGGSGTGG PLGDLAAGVL ATNNSTTANN NNGLMFNVGS  300
MSRFMGAAGT GAVGASGLGS GSGGRSSQSE VLTGSVQHSQ LMAQVQARMA ATAAAAAESA  360
GGVSSVCTTF LSNNVHNMGA QMQQQQLLQE QQPLQQQQSQ PQSQRLPLMT MLPQAQPLPQ  420
HIPQLDNSGP TATLSLPLPG QQQQQQVVLG QSNSHPLMQV QPLSSYQHQF SMVGQQQQHH  480
QHHRQQQQQQ QQQQTMACGQ QQGIDSGALY GTMSTLSLSA PFYSAASALP CTGNGGGLQM  540
TGHGSGANAL GSGMSGVGPV AAAPGFGGQH QQHHHRSASW ALDRGTAPCV TSAQNVVPMH  600
PTWQMNAGAG AGTVDGGLMM RPEDFAEDLM FLDDYVPQDL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	220	LKEHKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002954290.1	1e-167	hypothetical protein VOLCADRAFT_95062
TrEMBL	D8U6H6	1e-166	D8U6H6_VOLCA; Uncharacterized protein
STRING	XP_002954290.1	1e-166	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14132	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0003s0074.1.p