PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0221.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

GATA

Protein Properties

Length: 1698aa MW: 177932 Da PI: 7.8287

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0221.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.2	6.4e-15	28	60	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C nC+ttkTplWR++ g+ LCnaCG+y +++g+ Vocar.0002s0221.1.p 28 CNNCNTTKTPLWRKEA-GEL-LCNACGIYLKSRGV 60 ***********776..**********997 PP
2	GATA	40.1	5e-13	736	769	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+nCgtt+TplWR++ + +t CnaCG+y + +g Vocar.0002s0221.1.p 736 CANCGTTQTPLWRKDRETGCTMCNACGIYKQTHG 769 *****************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	4.3E-17	22	77	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	4.4E-15	22	71	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	19.151	22	76	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-12	23	73	No hit	No description
CDD	cd00202	7.76E-15	27	66	No hit	No description
Pfam	PF00320	1.0E-11	28	60	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	18.9	730	787	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.3E-9	730	781	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.52E-11	730	782	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.1E-15	733	776	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.43E-17	736	787	No hit	No description
Pfam	PF00320	3.9E-11	736	769	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	736	761	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1698 aa Download sequence Send to blast
MDTDAAIVPH TAPQSSSEEP SEKPDKACNN CNTTKTPLWR KEAGELLCNA CGIYLKSRGV 60 HRPVELIRAQ LNQSSRRTCA NSGGPGGDSS RTRALPGQVT RKSTRKIHER VIYGNEPADA 120 RQQRKPYSTA AVGVKIARTP SCSDAAAAYH KEMLASFLRY NGSGADRQAG GAAGYTYGYG 180 FGQCYYLSPD EDQRHEREYG AYDDDCAQPS GSRGPLPGLS PGAASERGGI RGGGTERDDG 240 SCGGDIRQDE SEDANIGPLS PAFSLGPELN EDDDAGTVAA FLIKMRRGGR RSRSRQQQRR 300 SPQRPQRVDD GPDGEELRSR QGMSRGVVPG DCCDDCDTGD ELHDKAVDAA AKPGTREAGA 360 GALLVAPWSL GVNGARQFSA VLASLAAAGQ VRGTGQTEAG AKSGGPWIKV EEAAKAGTAT 420 TARSVSPFAA LAHGTGSSGA TAAIKPDADD TWRRKHDGEE ASDPQSPESD RKLVPSPPSP 480 LNAGSGDASE TRQAKERDHL AKTAPPAGAG VSGGSGGPPG SQAALLRLLT QPDAARLLLA 540 MDPLQRLRFF AAAAVQGQAR PVAAGGGNDS GGEHEGGGGA CTDTDKYGSR HLPLGPDKDM 600 LGSARQRHHP HQDAGEAAEA LPGSSDPDRQ QGLRLRHEQP AYGARTPGAA LPEKHHRAPL 660 SRGYAAGSAD GTERVHTREQ LQGWGPAGGG DSSDPAAAME LVAAAAGGGG SSGRHASGCP 720 PPPPRPPRNH KGPLLCANCG TTQTPLWRKD RETGCTMCNA CGIYKQTHGF DRPVGGRNQL 780 PQPVSKRCAA LRTMPMRGSA AGEPHVTGRA SSSHVEPAIG AVAASLATGG ADSSLCAPAP 840 QPPQPAVVTS AMPWGVSPSA STTATNTTAA ATATAVARKC TSTDGEDRCI TTSVTGRSEA 900 VSAVGGAAGW QHQQQEQPCS VKRESGSATV GLESQQLRAD SDQGDKTEGG QAMTAACHGG 960 SAVGALEPSV QSGPWRPVSE LKPPGESDSH HQTSVPSPQT SGRGASPSPS PQQVSVGAVD 1020 DEAAGGDAAE PHQRCAWRDG ARCSASLQRP SYERESLERR GLADEAGDHA PGSDGASDGA 1080 PLAQDLGPRT AGGRAISPPP STGRGGSGDR PAGSNSSNNS SSGGAAPSSD MAIGEHLDAV 1140 DAVAGVAKVL ESNHSSVTLE AMVADEAVFR SRIPKTPQRL QLKKRQRVQP PHADWEEAEG 1200 CKGGDERQSQ HPRLCASSPA LARYFGGDAE GAGGVGSRDT LFMEKLAQQA AWLAQIAAVG 1260 GHDGEDGPLG GGGGPFQQRQ HHEDELDRQR QLLLLLRRDW NLKRGRDQVD CLSQQQQDRS 1320 QQQVPVVSQS TLLQRRISSA EVRAAGLAVG AEAAPSPSAA VAGPLQNQEQ QQKQQRPSNQ 1380 QREFSPPSSS PAPSGPSRRL TAQEQQDSHR GPSEQQLERA AGAMRQAAPT QSSLHVHVPL 1440 TQQQQPLQSR VTDNTPHLRV HDYKPRHHTH PFPAHNSQPP RQHHQQEEHP PARLRPTTVI 1500 VSGSGTQQPQ CVRIHAKPVP VHQLQQLQHL RAAGVSLGHL VVGQQQQQPA PQEQDPSRSG 1560 PPPPQSKQPH LYTHRQFPYV HHNQQQKQRN GISSAQPSTQ SQEAEPRQQH QPRWQVQVRH 1620 GPEQHEQLGH PTAVAAASFF GSPGPYPEAL SGVAAAQRPQ RASSISHPAV VPLRVVSPSA 1680 VVATEQLAKS IPTLAWI*

Sequence ? help Back to Top

Protein Sequence Length: 1698 aa Download sequence Send to blast

MDTDAAIVPH TAPQSSSEEP SEKPDKACNN CNTTKTPLWR KEAGELLCNA CGIYLKSRGV  60
HRPVELIRAQ LNQSSRRTCA NSGGPGGDSS RTRALPGQVT RKSTRKIHER VIYGNEPADA  120
RQQRKPYSTA AVGVKIARTP SCSDAAAAYH KEMLASFLRY NGSGADRQAG GAAGYTYGYG  180
FGQCYYLSPD EDQRHEREYG AYDDDCAQPS GSRGPLPGLS PGAASERGGI RGGGTERDDG  240
SCGGDIRQDE SEDANIGPLS PAFSLGPELN EDDDAGTVAA FLIKMRRGGR RSRSRQQQRR  300
SPQRPQRVDD GPDGEELRSR QGMSRGVVPG DCCDDCDTGD ELHDKAVDAA AKPGTREAGA  360
GALLVAPWSL GVNGARQFSA VLASLAAAGQ VRGTGQTEAG AKSGGPWIKV EEAAKAGTAT  420
TARSVSPFAA LAHGTGSSGA TAAIKPDADD TWRRKHDGEE ASDPQSPESD RKLVPSPPSP  480
LNAGSGDASE TRQAKERDHL AKTAPPAGAG VSGGSGGPPG SQAALLRLLT QPDAARLLLA  540
MDPLQRLRFF AAAAVQGQAR PVAAGGGNDS GGEHEGGGGA CTDTDKYGSR HLPLGPDKDM  600
LGSARQRHHP HQDAGEAAEA LPGSSDPDRQ QGLRLRHEQP AYGARTPGAA LPEKHHRAPL  660
SRGYAAGSAD GTERVHTREQ LQGWGPAGGG DSSDPAAAME LVAAAAGGGG SSGRHASGCP  720
PPPPRPPRNH KGPLLCANCG TTQTPLWRKD RETGCTMCNA CGIYKQTHGF DRPVGGRNQL  780
PQPVSKRCAA LRTMPMRGSA AGEPHVTGRA SSSHVEPAIG AVAASLATGG ADSSLCAPAP  840
QPPQPAVVTS AMPWGVSPSA STTATNTTAA ATATAVARKC TSTDGEDRCI TTSVTGRSEA  900
VSAVGGAAGW QHQQQEQPCS VKRESGSATV GLESQQLRAD SDQGDKTEGG QAMTAACHGG  960
SAVGALEPSV QSGPWRPVSE LKPPGESDSH HQTSVPSPQT SGRGASPSPS PQQVSVGAVD  1020
DEAAGGDAAE PHQRCAWRDG ARCSASLQRP SYERESLERR GLADEAGDHA PGSDGASDGA  1080
PLAQDLGPRT AGGRAISPPP STGRGGSGDR PAGSNSSNNS SSGGAAPSSD MAIGEHLDAV  1140
DAVAGVAKVL ESNHSSVTLE AMVADEAVFR SRIPKTPQRL QLKKRQRVQP PHADWEEAEG  1200
CKGGDERQSQ HPRLCASSPA LARYFGGDAE GAGGVGSRDT LFMEKLAQQA AWLAQIAAVG  1260
GHDGEDGPLG GGGGPFQQRQ HHEDELDRQR QLLLLLRRDW NLKRGRDQVD CLSQQQQDRS  1320
QQQVPVVSQS TLLQRRISSA EVRAAGLAVG AEAAPSPSAA VAGPLQNQEQ QQKQQRPSNQ  1380
QREFSPPSSS PAPSGPSRRL TAQEQQDSHR GPSEQQLERA AGAMRQAAPT QSSLHVHVPL  1440
TQQQQPLQSR VTDNTPHLRV HDYKPRHHTH PFPAHNSQPP RQHHQQEEHP PARLRPTTVI  1500
VSGSGTQQPQ CVRIHAKPVP VHQLQQLQHL RAAGVSLGHL VVGQQQQQPA PQEQDPSRSG  1560
PPPPQSKQPH LYTHRQFPYV HHNQQQKQRN GISSAQPSTQ SQEAEPRQQH QPRWQVQVRH  1620
GPEQHEQLGH PTAVAAASFF GSPGPYPEAL SGVAAAQRPQ RASSISHPAV VPLRVVSPSA  1680
VVATEQLAKS IPTLAWI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1178	1187	RLQLKKRQRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946273.1	0.0	hypothetical protein VOLCADRAFT_120238
TrEMBL	D8TIM1	0.0	D8TIM1_VOLCA; Uncharacterized protein
STRING	XP_002946273.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4830	8	10

Link Out ? help Back to Top
Phytozome	Vocar.0002s0221.1.p