PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0002s0008.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 1112aa    MW: 111988 Da    PI: 7.6702
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0002s0008.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP941.5e-2910481111265
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STT CS
                  SBP    2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrr 65  
                           C+v++C++dls++keyh+r+++C+ h ka+ v+ +g+ qrfCqqC+rfh+lsefD +krsCr r
  Vocar.0002s0008.2.p 1048 CHVDDCNVDLSSLKEYHQRFRICDYHLKAEIVMREGIPQRFCQQCGRFHTLSEFDGTKRSCRAR 1111
                           **************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF546954.0E-1718134IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.105.1E-2021134No hitNo description
PfamPF006514.8E-1530133IPR000210BTB/POZ domain
SMARTSM002252.8E-1138134IPR000210BTB/POZ domain
PROSITE profilePS5009713.61238104IPR000210BTB/POZ domain
Gene3DG3DSA:4.10.1100.102.0E-3010431109IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.25610451111IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-2710461111IPR004333Transcription factor, SBP-box
PfamPF031102.2E-2610481111IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MAAAMDVETA SALERVYRNV SCGIYRGLQA FLNDSRLSDI TLVRPDGRPI HSHQVILAAS  60
SRKFAAVLAN GDATGKELPI QGVDSAALET VIGFFYSGEC LLTPKTVVPI YDVCLKLEVP  120
GLAAGCEQYL QQNLNPQTCP IFLEASVQLL LEQTVKQCLE YSQSRFDDVV ATSSFQALSS  180
EALRLLLTYC RASAGEMGLA RALARWALRR PEHLAECEVM FKELNITTTV LLQLLQSPGF  240
VAGLQEGIPA AAPAPAVAKA EPADREATAG EAAAAVLPGS AGMVTGGGDG SSRANPGRSA  300
GSSGAAAGLG SMGSLITVGL PQPHRDAGQS GRLGTAEGPR RHQQLRVGNQ QQQQQLLRSG  360
SGPAAGAGQR SPGSSSAGGG ARTEGPSGDG GCGGFANTAE RDRDSSGGGA PPQSSPGKGE  420
RWVLGLVERG GAGGARQSGP GSSPSGAGVA SGGGDISRAA LQQLQQQQGP TARPVAPRVF  480
SLDGGVAAAA AHLDTETRFR SPLLQEFSRA VGTAAAGVGT SPRYDADTPG IRRLAALSPM  540
ATVPMSAAAV TGRPSMRPVV TLDAPAEPSR APAPLLSAHL PLFPVLGTDD ADTASPRSED  600
SAGSAGGETL LAVPLSALEQ AGLTLHLLPS GALAASGDLL GTWPLPLQVV SAGSGPHAPL  660
VALLPTSLVR KLQQQGPSRA AAAASAGVPP AQRGRPELAH QQSDHLAQLA AIAVPSPVQQ  720
QQQRPPASQP RGGGGPRLPL PWEATADDSS ASGGGVGLEE PALQMEMDAE ALDMQRLGQS  780
GQGKGAGASV SGMLPTSRFT SSSRGGTGPA GLLGPDSLGN AASLMNTIEA AAAVAAAAAH  840
QQQQQQQHEG GGLALSSAGA PARSGRGPVV SVLGGGSDGR GGLVTGNDVK ALSSPAARYG  900
AVGLGSMTAL LAAPPPRWSS APAAAGGPGG MAAAVAMATA AAAQLAAVRS GGKQQPSSSM  960
ALPPSEDPAA VAPAAASIPF GSGGGRRRRA TPEEYPDLGE EGSGGSRAAG GGSGAGGQRS  1020
ATRSSLGGRT GGDVNPAAQP SNKVPLLCHV DDCNVDLSSL KEYHQRFRIC DYHLKAEIVM  1080
REGIPQRFCQ QCGRFHTLSE FDGTKRSCRA R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-19104711111074squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-21squamosa promoter binding protein-like 3