PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vocar.0002s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1330aa MW: 136155 Da PI: 9.9134 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 99.5 | 2.8e-31 | 1029 | 1102 | 2 | 75 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 C+v++C++dls++keyh+r+++C+ h ka+ v+ +g+ qrfCqqC+rfh+lsefD +krsCr r + n+r + Vocar.0002s0008.1.p 1029 CHVDDCNVDLSSLKEYHQRFRICDYHLKAEIVMREGIPQRFCQQCGRFHTLSEFDGTKRSCRARGVHGNRRPVR 1102 ****************************************************************9888877555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.0E-30 | 1024 | 1090 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.94 | 1026 | 1103 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-28 | 1027 | 1104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-27 | 1029 | 1099 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1330 aa Download sequence Send to blast |
MVDSHIEIFA EAPLRADGLR YHRNQASPRN STQDIGVIAT QSFSGKELSG SCVLQRRSGV 60 PDSVAQSVEA QPRALPLEVV LRNGRMIYEI PWPSCIAFRF DDVVATSSFQ ALSSEALRLL 120 LTYCRASAGE MGLARALARW ALRRPEHLAE CEVMFKELNI TTTVLLQLLQ SPGFVAGLQE 180 GIPAAAPAPA VAKAEPADRE ATAGEAAAAV LPGSAGMVTG GGDGSSRANP GRSAGSSGAA 240 AGLGSMGSLI TVGLPQPHRD AGQSGRLGTA EGPRRHQQLR VGNQQQQQQL LRSGSGPAAG 300 AGQRSPGSSS AGGGARTEGP SGDGGCGGFA NTAERDRDSS GGGAPPQSSP GKGERWVLGL 360 VERGGAGGAR QSGPGSSPSG AGVASGGGDI SRAALQQLQQ QQGPTARPVA PRVFSLDGGV 420 AAAAAHLDTE TRFRSPLLQE FSRAVGTAAA GVGTSPRYDA DTPGIRRLAA LSPMATVPMS 480 AAAVTGRPSM RPVVTLDAPA EPSRAPAPLL SAHLPLFPVL GTDDADTASP RSEDSAGSAG 540 GETLLAVPLS ALEQAGLTLH LLPSGALAAS GDLLGTWPLP LQVVSAGSGP HAPLVALLPT 600 SLVRKLQQQG PSRAAAAASA GVPPAQRGRP ELAHQQSDHL AQLAAIAVPS PVQQQQQRPP 660 ASQPRGGGGP RLPLPWEATA DDSSASGGGV GLEEPALQME MDAEALDMQR LGQSGQGKGA 720 GASVSGMLPT SRFTSSSRGG TGPAGLLGPD SLGNAASLMN TIEAAAAVAA AAAHQQQQQQ 780 QHEGGGLALS SAGAPARSGR GPVVSVLGGG SDGRGGLVTG NDVKALSSPA ARYGAVGLGS 840 MTALLAAPPP RWSSAPAAAG GPGGMAAAVA MATAAAAQLA AVRSGGKQQP SSSMALPPSE 900 DPAAVAPAAA SIPFGSGGGR RRRATPEEYP DLGEEGSGGS RAAGGGSGAG GQRSATRSSL 960 GGRTGGDVNP AAQPSNKLGE LHMHPNPPRL QLDVGCWQML LLRLLLLLYR RLFACPMSYT 1020 RTAQVPLLCH VDDCNVDLSS LKEYHQRFRI CDYHLKAEIV MREGIPQRFC QQCGRFHTLS 1080 EFDGTKRSCR ARGVHGNRRP VRTSSNSSSS STSNSSGSST SSSRENGICH PPCTAPHRKT 1140 GNISAIIYSR RNRGDIPADS TPDLALTQFI LDVMAGQRHR RICSLRVFSA WEAMCGSGDE 1200 LSFLGPSAIA GRCKPGRTPR KLHGVLTFVV TASLNGPLLQ GVFRLGGKLQ RHNARRRKRP 1260 DQRGSGGDGG SDEPRKSRHP APLPSTSQQE PELGLALHRT ERPLACHPPP TDPLLLCFRV 1320 VLSPHHFPK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-19 | 1028 | 1099 | 10 | 82 | squamosa promoter binding protein-like 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-21 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Vocar.0002s0008.1.p |