PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1778.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 842aa    MW: 90154.6 Da    PI: 6.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-07103124426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          elC ++a  G C  GdrCkF+H+
  Vocar.0001s1778.1.p 103 ELCTNYAL-GRCTWGDRCKFSHD 124
                          8*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.2E-499125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.49399126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-7101128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.887139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.703.3E-73466718IPR013785Aldolase-type TIM barrel
CDDcd028018.90E-90470714No hitNo description
SuperFamilySSF513957.25E-62471792No hitNo description
PfamPF012072.7E-49473722IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360554572IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MEVKSEEAIG SAPLLTAQQM IERCIVPVKA EFLIRKVPSQ KKEQPPTTPA DGANVEPLTN  60
NGAGTGTAGG AGKQKQDRAQ EQSRNQSRKQ MRKGVRDGGR QAELCTNYAL GRCTWGDRCK  120
FSHDLVEYIK SKPADLPGMC PWTAVQATCP YGITCRYAMG HASEDELHKT LRVTLMESAS  180
TASTAPPSGS DPKDHDDNGN NGNGNGSAAA PGVEDATAAL PLSLLPLPLP SSIEKEINYL  240
SKDVQALLWK NRYDFNRADG ILKSMSLRIS FKHQPKPTRE EVRNEGGGGK KAAEGAVAGG  300
GGGGDVPVES ARRQLGNNDP ELPPPPQQQQ QEEGTREPAA VQAGAAPPQV AAAEVAEVAA  360
PAKVNEGEDV MKIDVDAAVA PPDGGAAAVT AATCDTDGGA DVDADGPAAK RQRTDGAAIN  420
DAATGPPAAA EQHPPAAAMT AAAVVSESRA AYVELPVRQC ERRRLDFRGK TYLAPLTTVG  480
NLPFRRVCKS LGVDVTCGEM ALATNLLQGQ AAEWALLKRH PCEDLFGVQV CGGYPDALAR  540
VGQLLNERLV VDFVDINMGC PIDLVCDKNA GSALLRQPRR IEQILRATSA ALGDIPLTFK  600
TRKGFNDGED VAHTFLPKAA GWGAAAVTLH GRTRQQRYSK LADWDYIQRC AAPCSEAGLQ  660
LIGNGDVFSY LDWNRQMDRR ETEGEGGGSL ASIMIGRGAL IKPWIFTEIK EQRHWDISAS  720
ERLDLYKQFC TAGLEHWGSD GRGVETTRRF LLEWLSFTCR YVPVGLLEVL PQHMNHRPPA  780
FRGRSELETL MSSEEPQDWI RISEMLLGPP PAPITSFTAK HKSSSYAGAP GAASELDMAR  840
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A6e-2246771127258tRNA-dihydrouridine synthase B
6ei9_B6e-2246771127258tRNA-dihydrouridine synthase B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951897.10.0hypothetical protein VOLCADRAFT_105302
TrEMBLD8TZX20.0D8TZX2_VOLCA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_002951897.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777