PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1636.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 777aa MW: 80504.9 Da PI: 7.1653

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1636.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.7	1.2e-08	682	729	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + kre +++NR+A+rr+R+R k i L++ v+ ea k+Lk++l Vocar.0001s1636.1.p 682 SAKRELCRERNRTAQRRFRERQKDLIRALQDQVEHQEALIKDLKSRLA 729 78******************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0065	680	744	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-5	684	729	No hit	No description
SuperFamily	SSF57959	3.8E-7	689	730	No hit	No description
CDD	cd14686	4.15E-10	689	732	No hit	No description
PROSITE pattern	PS00036	0	689	702	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MNAGHGEAPH VCVFATFEPL APCMSSPSAQ GPAQHVLDLG DAVQRNYPHA SQALHLRAAA 60 ASGPMGHTLP TGVTATTQDL IGLNSHALQG PYFGSHGMPP TRSVYARLPM PAQRTSESSS 120 AASGSESPFA FQGLNGSTLV PPGDEHTDAL FQSLMSMPTK AVPQHPHQPQ QQQLQHHQHH 180 HHQQQQQTSG RLPDGGRAAS GDPSRGRLTG LGTAPPPPPP PPCGAVDVLL ARALGGPGQL 240 GFGAGGDGGS RGSQAPPLAL YRDEDGQLPR PMRHAAAANV LSYDNTLLQC HRAASAATAA 300 TAAGLSADVK NGIALVRQQL EQLEHGGAMP STLPRLSALP EFPMGFVPPD LSPRPPPLLT 360 ALSETTAEIE AHHLRGQDAM FEGGTRQLAG GRVAAPGVVA NQGLHQQHHH QGFPHQQKPM 420 QQGVTDAVAA VAAPATQQRH HQRWQPPMPH QRHHPEHQLQ AGDRTMRDAQ IAMVGATAGT 480 AGPRPAMMAT TASAVARKDW DDGIQIGAAA AAGVNNRSGG ADGDGIGTSS ARQRRRTHIA 540 GTYGVQSVTV EKDASSEGQV AGEKEACNSS IGTAPGVDDG GGKGASCRNG PTGSVGGLSG 600 RDVEPRAIDH QGEPGTTLAR GGSGAVPGGE CAGEGQLDGE YGGGIDEGDD EDDTTDGGGD 660 YGSPLRQSRK RTASQRRRGS ASAKRELCRE RNRTAQRRFR ERQKDLIRAL QDQVEHQEAL 720 IKDLKSRLAV YEGRTSPQAA PPLPASVGPS SAAEQQAGCD QPPNATSTAT ATSNGN*

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MNAGHGEAPH VCVFATFEPL APCMSSPSAQ GPAQHVLDLG DAVQRNYPHA SQALHLRAAA  60
ASGPMGHTLP TGVTATTQDL IGLNSHALQG PYFGSHGMPP TRSVYARLPM PAQRTSESSS  120
AASGSESPFA FQGLNGSTLV PPGDEHTDAL FQSLMSMPTK AVPQHPHQPQ QQQLQHHQHH  180
HHQQQQQTSG RLPDGGRAAS GDPSRGRLTG LGTAPPPPPP PPCGAVDVLL ARALGGPGQL  240
GFGAGGDGGS RGSQAPPLAL YRDEDGQLPR PMRHAAAANV LSYDNTLLQC HRAASAATAA  300
TAAGLSADVK NGIALVRQQL EQLEHGGAMP STLPRLSALP EFPMGFVPPD LSPRPPPLLT  360
ALSETTAEIE AHHLRGQDAM FEGGTRQLAG GRVAAPGVVA NQGLHQQHHH QGFPHQQKPM  420
QQGVTDAVAA VAAPATQQRH HQRWQPPMPH QRHHPEHQLQ AGDRTMRDAQ IAMVGATAGT  480
AGPRPAMMAT TASAVARKDW DDGIQIGAAA AAGVNNRSGG ADGDGIGTSS ARQRRRTHIA  540
GTYGVQSVTV EKDASSEGQV AGEKEACNSS IGTAPGVDDG GGKGASCRNG PTGSVGGLSG  600
RDVEPRAIDH QGEPGTTLAR GGSGAVPGGE CAGEGQLDGE YGGGIDEGDD EDDTTDGGGD  660
YGSPLRQSRK RTASQRRRGS ASAKRELCRE RNRTAQRRFR ERQKDLIRAL QDQVEHQEAL  720
IKDLKSRLAV YEGRTSPQAA PPLPASVGPS SAAEQQAGCD QPPNATSTAT ATSNGN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956175.1	0.0	hypothetical protein VOLCADRAFT_97157
TrEMBL	D8UC11	0.0	D8UC11_VOLCA; Uncharacterized protein
STRING	XP_002956175.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12398	3	3

Link Out ? help Back to Top
Phytozome	Vocar.0001s1636.1.p