PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1587.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 2298aa    MW: 235402 Da    PI: 6.611
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1587.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.75.1e-26132208177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +C v+gC+a+l+ +k+y+ r ++Ce+h  a++++v+g+  rfCqqC+rf  l++f  +k+sC +rL+k n+r r+k+
  Vocar.0001s1587.1.p 132 VCVVDGCDANLAGLKRYFTRLRICEAHLSAKAIVVDGVISRFCQQCGRFQPLKDFTGKKKSCTERLEKVNARHREKA 208
                          6***********************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-24128193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.82130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-24132210IPR004333Transcription factor, SBP-box
PfamPF031104.1E-27133206IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2298 aa     Download sequence    Send to blast
MPSTNRSRQR SVADQAAEEE EWDPADWEWQ PLSMRARKKA RSGASAQGKS VTSLYSRTLC  60
LFGSISPCLT QNGFEAANLA LDPPPCATPG SDVEPPVSVA LKLEQTAGQA EPKFANLPVY  120
NTLKKIESKP DVCVVDGCDA NLAGLKRYFT RLRICEAHLS AKAIVVDGVI SRFCQQCGRF  180
QPLKDFTGKK KSCTERLEKV NARHREKAMQ KNQPRRPDPQ PQWQEVPMAW GGLDAAPAAA  240
PSPTVRQVPA PAEASIGHKA SAVPVAKLAA AAGTAAAASP PCAASDVMPL DIDRTVSYGG  300
ISSVPTLPAA ASDPRLAVAA AVASGTEASS CLPLGPPSGG AGSGGAVASG TVWPGLLDDN  360
GQATPGGVDG EGHDTEQIVL PSRVVSTGGP GIVWYSTRRP SPPRRPAVKP PPPPPPPPPQ  420
AAATDTVTAA LGGRVSLPAH QGSVGASAKS RPVASREMFW NRVTSEMPLP TAQGNCSTDG  480
GGAAPSPAEQ AAATAPPPPP PPPPPRDVSR TLSAAHGVLF HPVRVQMMHV CKDQLCSDKP  540
PLPLLLPPPS QQQQVEQQQQ EGQMAPQPRT STHSGPAAAI SGGEAPCAPR VVDSPPMAPS  600
GPMPYESPPC DAAAPMADTV SRGTATSGCD DRWVSGDAAV RYGAALTRTA PNNGTALYGT  660
LAPPPRAAAA AVLGSARSDQ SAIMGPAAAA AAAAAAGSSP MSACTEGASG AYGDSAGGVD  720
RSHSAVQQAS SRQLGAGGAA AESLGRCISG VMEGLAPLMA KVQRLAAAAA ASPPVPGDGS  780
GELAGRGSSS SGGGDGTGAG GGILASGSLS PGMATRIDVR NNSLPAVIES SREILERATE  840
LTQWLNQQPP QPPPSQPSLP LLPPQHQQAV GMPTVPTAST AQTSACTWSP PEGCASSGAP  900
GALPFPGPMQ GMQEYGNAMY GSHYVRRPYP SHAQPPTGSG MYLPRPSYPQ PYPYAPQQNL  960
QPPPQPISQQ PQLPPPPPQL VGGLNSYPQQ QMLQPSYSQP QPERLHQPHY VNPALQLQPQ  1020
IPPPPPQLLP QPPQLPYSSS GQPVVLAAPI DHQAAKGHYY TRAMSAKSVY ILNPSYGTGT  1080
QYGRNRPYPC APLPQGYGFY DQDAISPYSY SSQPYSQYGS ATQSQLGAGG GGGGGGAVAI  1140
IGNGYAVDTN GGEAVAAAPP AAAVDGSSAW RGDVPPPAAA MVSAVAYDEE DDDDDDDRAF  1200
NLLLQEMVED TDPPPGTPPL GVDGQLLNAP DVEVVFGEVC NSFLTVSLVK AATDRIVKPR  1260
KLRKPCMIQH EKKPGCLQLV VDVQRSAAAA AAGPLSSLLI PRHDPEQAAA DVFRFMGQRL  1320
RDTYVQLRYQ LRYQLRYQLR YQLRYQLRSQ LRSQLRSQLR SQLRSQLRYQ LRYQLRYQLR  1380
YQLRYQLRYQ LRYQLRVGDQ VLQIRVGEDP RVTSWEQAAE DGGLSGAKMP SLLDCSAAAV  1440
CAGSEAVLEL YGSNLLQPHF KVFARLRGHD LPAADLLADV PAAAAAAAAA AADGDAVATA  1500
TVTTTAAGGG GGSDGGGDSG RTRRISVAVP ADAVGLLVVE VGVGHLLGGW WPVLVLPEGY  1560
GTAAAELDEL MQYSANRSTS SSGGLGIGQQ PPTPPQQQQQ QHERQRLITD LGQVLEVYTA  1620
AKAAAAAAAA AAAAAAADAA SPSNRPEGDV AGGSSSAVLA NGGAASSPDS PSSVDSSSGG  1680
SGGGAAAASG GGSSITTTAT SQAGGWGYTD ASESLSATAV GSSRVSSRVS SHAALRHGKC  1740
TSIDPIGLTL ARATYPYPKG NDCRSTLPPR GGRGRYGNGS DAVGGVRCGG GGAVSSGGGG  1800
GGRGCQRALR LRHAMTVEVA AAAGAAATAA MPPSAAVVRQ ALSKVAQLLL FTVARLSYVR  1860
TLIRTSWCTY SYECVCVLSC PIRVKVPIEA GACWGFIPLY PAPVGVRNSN KRFSLGISGE  1920
WSAKLGPRGH SCRSSPELPV GGPPFKTPDY RIQSQLLLAA AELLTTFLPS PPSPEEAAAA  1980
TATATVTAAA AAAAAAATRQ RLAAVGVDLQ ELLPLAVLSG STATVDCLTR FSVRALNASL  2040
RLDLPQGPAG MSLLHLAVVL DDGGAMAKHL ISTQPWAAWS CLCLGWAPPV PLAALHTDRP  2100
AAAVPLAAAT AAAAAAAAAD SAQSDNGVAF QPTVDDDAAG SGGGVDRAPP VELTPGSLSL  2160
LLGRTELLAS ALSRLVLADD DLVAVGPEMS VQVLATDDDG DEEEEEVLER GLGGERGRAN  2220
EGDGGEKLAA AVAAAAAAAD ADGASLLTAG ARGGGGPTDG GGDGLAAAAM GVVESWSRLS  2280
TALLTALCEQ LEGQRLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-141322061084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002956200.10.0hypothetical protein VOLCADRAFT_97206
TrEMBLD8UC530.0D8UC53_VOLCA; Uncharacterized protein
STRINGXP_002956200.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.19e-17squamosa promoter binding protein-like 5